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| | ==Crystal structure of the karyopherin Kap121p bound to the extreme C-terminus of the protein phosphatase Cdc14p== | | ==Crystal structure of the karyopherin Kap121p bound to the extreme C-terminus of the protein phosphatase Cdc14p== |
| - | <StructureSection load='4zj7' size='340' side='right' caption='[[4zj7]], [[Resolution|resolution]] 2.40Å' scene=''> | + | <StructureSection load='4zj7' size='340' side='right'caption='[[4zj7]], [[Resolution|resolution]] 2.40Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4zj7]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZJ7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ZJ7 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4zj7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZJ7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ZJ7 FirstGlance]. <br> |
| - | </td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protein-tyrosine-phosphatase Protein-tyrosine-phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.48 3.1.3.48] </span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zj7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zj7 OCA], [http://pdbe.org/4zj7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zj7 RCSB], [http://www.ebi.ac.uk/pdbsum/4zj7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zj7 ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4zj7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zj7 OCA], [https://pdbe.org/4zj7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4zj7 RCSB], [https://www.ebi.ac.uk/pdbsum/4zj7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4zj7 ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/IMB3_YEAST IMB3_YEAST]] Involved in the nuclear import of ribosomal proteins. Binds to nucleoporins and the GTP-bound form of GSP1 (Ran). Plays a role in protein secretion. [[http://www.uniprot.org/uniprot/CDC14_YEAST CDC14_YEAST]] Protein phosphatase which antagonizes mitotic cyclin-dependent kinase CDC28, the inactivation of which is essential for exit from mitosis. To access its substrates, is released from nucleolar sequestration during mitosis. Plays an essential in coordinating the nuclear division cycle with cytokinesis through the cytokinesis checkpoint. Involved in chromosome segregation, where it is required for meiosis I spindle dissambly as well as for establishing two consecutive chromosome segregation phases. Allows damaged actomyosin rings to be maintained to facilitate completion of cell division in response to minor perturbation of the cell division machinery. Inhibits transcription of ribosomal genes (rDNA) during anaphase and controls segregation of nucleolus by facilitating condensin targeting to rDNA chromatin in anaphase. Dephosphorylates SIC1, a CDC28 inhibitor, and SWI5, a transcription factor for SIC1, and induces degradation of mitotic cyclins, likely by dephosphorylating the activator of mitotic cyclin degradation, CDH1. Dephosphorylates the microtubule bundling factor ASE1 which is required to define a centered and focused mitotic spindle midzone that can drive continuous spindle elongation. Dephosphorylates the anaphase-promoting complex inhibitor ACM1, leading to its degradation. Facilitates INN1-CYK3 complex formation which promotes cytokinesis through the dephosphosprylation of CDC28-phosphosphorylated INN1. Reverts also the inhibitory CDC28 phosphorylation of CHS2 for endoplasmic reticulum export, ensuring that septum formation is contingent upon chromosome separation and exit from mitosis. Additional substrates for CDC14 are the formins BNI1 and BNR1, as well as CDC6, DBP2, DSN1, INCENP, KAR9, MCM3, ORC2, ORC6, SLD2, and SWI6. Activity is inhibited by interaction with NET1 which sequesters it to the nucleolus.<ref>PMID:11511359</ref> <ref>PMID:12737806</ref> <ref>PMID:14993267</ref> <ref>PMID:15004526</ref> <ref>PMID:15137939</ref> <ref>PMID:15190202</ref> <ref>PMID:15917648</ref> <ref>PMID:17116692</ref> <ref>PMID:18235228</ref> <ref>PMID:18287090</ref> <ref>PMID:18595708</ref> <ref>PMID:19158678</ref> <ref>PMID:19339280</ref> <ref>PMID:20619650</ref> <ref>PMID:20660629</ref> <ref>PMID:20923974</ref> <ref>PMID:20980394</ref> <ref>PMID:21127052</ref> <ref>PMID:21690308</ref> <ref>PMID:21784165</ref> <ref>PMID:22072794</ref> <ref>PMID:22078879</ref> <ref>PMID:22117071</ref> <ref>PMID:22363215</ref> <ref>PMID:22454527</ref> <ref>PMID:22872148</ref> <ref>PMID:7021319</ref> <ref>PMID:8668128</ref> <ref>PMID:9295359</ref> <ref>PMID:9885559</ref> | + | [https://www.uniprot.org/uniprot/IMB3_YEAST IMB3_YEAST] Involved in the nuclear import of ribosomal proteins. Binds to nucleoporins and the GTP-bound form of GSP1 (Ran). Plays a role in protein secretion. |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | ==See Also== | | ==See Also== |
| - | *[[Tyrosine phosphatase|Tyrosine phosphatase]] | + | *[[Dual specificity phosphatase 3D structures|Dual specificity phosphatase 3D structures]] |
| | + | *[[Importin 3D structures|Importin 3D structures]] |
| | + | *[[Tyrosine phosphatase 3D structures|Tyrosine phosphatase 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Protein-tyrosine-phosphatase]] | + | [[Category: Large Structures]] |
| - | [[Category: Hirano, H]] | + | [[Category: Saccharomyces cerevisiae S288C]] |
| - | [[Category: Kobayashi, J]] | + | [[Category: Hirano H]] |
| - | [[Category: Matsuura, Y]] | + | [[Category: Kobayashi J]] |
| - | [[Category: Karyopherin]] | + | [[Category: Matsuura Y]] |
| Structural highlights
Function
IMB3_YEAST Involved in the nuclear import of ribosomal proteins. Binds to nucleoporins and the GTP-bound form of GSP1 (Ran). Plays a role in protein secretion.
Publication Abstract from PubMed
In Saccharomyces cerevisiae, the protein phosphatase Cdc14p is an antagonist of mitotic cyclin-dependent kinases and is a key regulator of late mitotic events such as chromosome segregation, spindle disassembly and cytokinesis. The activity of Cdc14p is controlled by cell-cycle dependent changes in its association with its competitive inhibitor Net1p (also known as Cfi1p) in the nucleolus. For most of the cell cycle up to metaphase, Cdc14p is sequestered in the nucleolus in an inactive state. During anaphase, Cdc14p is released from Net1p, spreads into the nucleus and cytoplasm, and dephosphorylates key mitotic targets. Although regulated nucleocytoplasmic shuttling of Cdc14p has been suggested to be important for exit from mitosis, the mechanism underlying Cdc14p nuclear trafficking remains poorly understood. Here we show that the C-terminal region (residues 517-551) of Cdc14p can function as a nuclear localization signal (NLS) in vivo and also binds to Kap121p (also known as Pse1p), an essential nuclear import carrier in yeast, in a Gsp1p-GTP-dependent manner in vitro. Moreover we report a crystal structure, at 2.4 A resolution, of Kap121p bound to the C-terminal region of Cdc14p. The structure and structure-based mutational analyses suggest that either the last five residues at the extreme C-terminus of Cdc14p (residues 547-551; Gly-Ser-Ile-Lys-Lys) or adjacent residues with similar sequence (residues 540-544; Gly-Gly-Ile-Arg-Lys) can bind to the NLS-binding site of Kap121p, with two residues (Ile in the middle and Lys at the end of the five residues) of Cdc14p making key contributions to the binding specificity. Based on comparison with other structures of Kap121p-ligand complexes, we propose "IK-NLS" as an appropriate term to refer to the Kap121p-specific NLS.
Crystal structure of the karyopherin Kap121p bound to the extreme C-terminus of the protein phosphatase Cdc14p.,Kobayashi J, Hirano H, Matsuura Y Biochem Biophys Res Commun. 2015 May 28. pii: S0006-291X(15)00983-3. doi:, 10.1016/j.bbrc.2015.05.060. PMID:26022122[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Kobayashi J, Hirano H, Matsuura Y. Crystal structure of the karyopherin Kap121p bound to the extreme C-terminus of the protein phosphatase Cdc14p. Biochem Biophys Res Commun. 2015 May 28. pii: S0006-291X(15)00983-3. doi:, 10.1016/j.bbrc.2015.05.060. PMID:26022122 doi:http://dx.doi.org/10.1016/j.bbrc.2015.05.060
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