This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1xss

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:11, 15 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Semi-rational engineering of a green-emitting coral fluorescent protein into an efficient highlighter.==
==Semi-rational engineering of a green-emitting coral fluorescent protein into an efficient highlighter.==
-
<StructureSection load='1xss' size='340' side='right' caption='[[1xss]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
+
<StructureSection load='1xss' size='340' side='right'caption='[[1xss]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1xss]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Favfa Favfa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XSS FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1xss]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Dipsastraea_favus Dipsastraea favus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XSS FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DYG:(3S)-3-AMINO-3-[(4Z)-1-(CARBOXYMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-IMIDAZOL-2-YL]PROPANOIC+ACID'>DYG</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DYG:(3S)-3-AMINO-3-[(4Z)-1-(CARBOXYMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-IMIDAZOL-2-YL]PROPANOIC+ACID'>DYG</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xss FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xss OCA], [http://pdbe.org/1xss PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xss RCSB], [http://www.ebi.ac.uk/pdbsum/1xss PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xss ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xss FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xss OCA], [https://pdbe.org/1xss PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xss RCSB], [https://www.ebi.ac.uk/pdbsum/1xss PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xss ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q53UG7_DIPFA Q53UG7_DIPFA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 29: Line 31:
==See Also==
==See Also==
-
*[[Green Fluorescent Protein|Green Fluorescent Protein]]
+
*[[Green Fluorescent Protein 3D structures|Green Fluorescent Protein 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Favfa]]
+
[[Category: Dipsastraea favus]]
-
[[Category: Karasawa, S]]
+
[[Category: Large Structures]]
-
[[Category: Miyawaki, A]]
+
[[Category: Karasawa S]]
-
[[Category: Nukina, N]]
+
[[Category: Miyawaki A]]
-
[[Category: Shimizu, H]]
+
[[Category: Nukina N]]
-
[[Category: Tsutsui, H]]
+
[[Category: Shimizu H]]
-
[[Category: Fluorescent protein]]
+
[[Category: Tsutsui H]]
-
[[Category: Luminescent protein]]
+

Current revision

Semi-rational engineering of a green-emitting coral fluorescent protein into an efficient highlighter.

PDB ID 1xss

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools