This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2c9j

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:19, 15 November 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
==STRUCTURE OF THE FLUORESCENT PROTEIN CMFP512 AT 1.35A FROM CERIANTHUS MEMBRANACEUS==
+
 
-
<StructureSection load='2c9j' size='340' side='right' caption='[[2c9j]], [[Resolution|resolution]] 1.35&Aring;' scene=''>
+
==Structure of the fluorescent protein cmFP512 at 1.35A from Cerianthus membranaceus==
 +
<StructureSection load='2c9j' size='340' side='right'caption='[[2c9j]], [[Resolution|resolution]] 1.35&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2c9j]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Cermm Cermm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2C9J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2C9J FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2c9j]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Cerianthus_membranaceus Cerianthus membranaceus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2C9J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2C9J FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRQ:[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC+ACID'>CRQ</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.35&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1b9c|1b9c]], [[1bfp|1bfp]], [[1c4f|1c4f]], [[1ema|1ema]], [[1emb|1emb]], [[1emc|1emc]], [[1eme|1eme]], [[1emf|1emf]], [[1emg|1emg]], [[1emk|1emk]], [[1eml|1eml]], [[1emm|1emm]], [[1f09|1f09]], [[1f0b|1f0b]], [[1g7k|1g7k]], [[1gfl|1gfl]], [[1ggx|1ggx]], [[1h6r|1h6r]], [[1hcj|1hcj]], [[1huy|1huy]], [[1jby|1jby]], [[1jbz|1jbz]], [[1jc0|1jc0]], [[1jc1|1jc1]], [[1kp5|1kp5]], [[1kyp|1kyp]], [[1kyr|1kyr]], [[1kys|1kys]], [[1myw|1myw]], [[1oxd|1oxd]], [[1oxe|1oxe]], [[1oxf|1oxf]], [[1q4a|1q4a]], [[1q4b|1q4b]], [[1q4c|1q4c]], [[1q4d|1q4d]], [[1q4e|1q4e]], [[1q73|1q73]], [[1qxt|1qxt]], [[1qy3|1qy3]], [[1qyf|1qyf]], [[1rm9|1rm9]], [[1rmm|1rmm]], [[1rmo|1rmo]], [[1rmp|1rmp]], [[1rrx|1rrx]], [[1s6z|1s6z]], [[1w7s|1w7s]], [[1w7t|1w7t]], [[1w7u|1w7u]], [[1xa9|1xa9]], [[1xae|1xae]], [[1xss|1xss]], [[1yjf|1yjf]], [[1z1p|1z1p]], [[1z1q|1z1q]], [[1zgo|1zgo]], [[1zgp|1zgp]], [[1zgq|1zgq]], [[1zux|1zux]], [[2a46|2a46]], [[2a50|2a50]], [[2a52|2a52]], [[2a53|2a53]], [[2a54|2a54]], [[2a56|2a56]], [[2b3p|2b3p]], [[2b3q|2b3q]], [[2btj|2btj]], [[2emd|2emd]], [[2emn|2emn]], [[2emo|2emo]], [[2c9i|2c9i]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CRQ:[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC+ACID'>CRQ</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2c9j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2c9j OCA], [http://pdbe.org/2c9j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2c9j RCSB], [http://www.ebi.ac.uk/pdbsum/2c9j PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2c9j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2c9j OCA], [https://pdbe.org/2c9j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2c9j RCSB], [https://www.ebi.ac.uk/pdbsum/2c9j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2c9j ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q5ZQQ5_CERMM Q5ZQQ5_CERMM]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c9/2c9j_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c9/2c9j_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2c9j ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 28: Line 31:
==See Also==
==See Also==
-
*[[Green Fluorescent Protein|Green Fluorescent Protein]]
+
*[[Green Fluorescent Protein 3D structures|Green Fluorescent Protein 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Cermm]]
+
[[Category: Cerianthus membranaceus]]
-
[[Category: Nienhaus, G U]]
+
[[Category: Large Structures]]
-
[[Category: Nienhaus, K]]
+
[[Category: Nienhaus GU]]
-
[[Category: Renzi, F]]
+
[[Category: Nienhaus K]]
-
[[Category: Vallone, B]]
+
[[Category: Renzi F]]
-
[[Category: Wiedenmann, J]]
+
[[Category: Vallone B]]
-
[[Category: Beta-barrel]]
+
[[Category: Wiedenmann J]]
-
[[Category: Bioluminescence]]
+
-
[[Category: Fluorescent protein]]
+
-
[[Category: Luminescence]]
+
-
[[Category: Luminescent protein]]
+

Current revision

Structure of the fluorescent protein cmFP512 at 1.35A from Cerianthus membranaceus

PDB ID 2c9j

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2c9j"
Personal tools