This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4dx3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:12, 15 November 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:4dx3.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of an enolase (mandelate racemase subgroup, target EFI-502086) from Agrobacterium tumefaciens, with a succinimide residue==
-
The line below this paragraph, containing "STRUCTURE_4dx3", creates the "Structure Box" on the page.
+
<StructureSection load='4dx3' size='340' side='right'caption='[[4dx3]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[4dx3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DX3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DX3 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SNN:L-3-AMINOSUCCINIMIDE'>SNN</scene></td></tr>
-
{{STRUCTURE_4dx3| PDB=4dx3 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dx3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dx3 OCA], [https://pdbe.org/4dx3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dx3 RCSB], [https://www.ebi.ac.uk/pdbsum/4dx3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dx3 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q7D1T6_AGRFC Q7D1T6_AGRFC]
-
===Crystal structure of an enolase (mandelate racemase subgroup, target EFI-502086) from Agrobacterium tumefaciens, with a succinimide residue===
+
==See Also==
-
 
+
*[[Enolase 3D structures|Enolase 3D structures]]
-
 
+
*[[Mandelate racemase|Mandelate racemase]]
-
==About this Structure==
+
*[[Mandelate racemase/muconate lactonizing enzyme 3D structures|Mandelate racemase/muconate lactonizing enzyme 3D structures]]
-
[[4dx3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DX3 OCA].
+
__TOC__
-
[[Category: Agrobacterium tumefaciens]]
+
</StructureSection>
-
[[Category: Almo, S C.]]
+
[[Category: Agrobacterium fabrum str. C58]]
-
[[Category: Bhosle, R.]]
+
[[Category: Large Structures]]
-
[[Category: Bouvier, J T.]]
+
[[Category: Al Obaidi NF]]
-
[[Category: EFI, Enzyme Function Initiative.]]
+
[[Category: Almo SC]]
-
[[Category: Gerlt, J A.]]
+
[[Category: Bhosle R]]
-
[[Category: Imker, H J.]]
+
[[Category: Bouvier JT]]
-
[[Category: Morisco, L L.]]
+
[[Category: Gerlt JA]]
-
[[Category: Obaidi, N F.Al.]]
+
[[Category: Imker HJ]]
-
[[Category: Sojitra, S.]]
+
[[Category: Morisco LL]]
-
[[Category: Toro, R.]]
+
[[Category: Sojitra S]]
-
[[Category: Vetting, M W.]]
+
[[Category: Toro R]]
-
[[Category: Wasserman, S R.]]
+
[[Category: Vetting MW]]
-
[[Category: Apha-beta-barrel fold]]
+
[[Category: Wasserman SR]]
-
[[Category: Efi]]
+
-
[[Category: Enolase]]
+
-
[[Category: Enzyme function initiative]]
+
-
[[Category: Isomerase]]
+
-
[[Category: Mandelate racemase subgroup]]
+
-
[[Category: Structural genomic]]
+

Current revision

Crystal structure of an enolase (mandelate racemase subgroup, target EFI-502086) from Agrobacterium tumefaciens, with a succinimide residue

PDB ID 4dx3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools