This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5ag0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:28, 15 November 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5ag0 is ON HOLD until Paper Publication
+
==DyP-type peroxidase of Auricularia auricula-judae (AauDyPI) crystallized at pH 6.5==
-
 
+
<StructureSection load='5ag0' size='340' side='right'caption='[[5ag0]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
-
Authors: Strittmatter, E., Piontek, K., Plattner, D.A.
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[5ag0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Auricularia_auricula-judae Auricularia auricula-judae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AG0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5AG0 FirstGlance]. <br>
-
Description: DyP-type peroxidase of Auricularia auricula-judae (AauDyPI) crystallized at pH 6.5
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
-
[[Category: Unreleased Structures]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CAC:CACODYLATE+ION'>CAC</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOA:GLYCOLIC+ACID'>GOA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-
[[Category: Plattner, D.A]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ag0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ag0 OCA], [https://pdbe.org/5ag0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ag0 RCSB], [https://www.ebi.ac.uk/pdbsum/5ag0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ag0 ProSAT]</span></td></tr>
-
[[Category: Piontek, K]]
+
</table>
-
[[Category: Strittmatter, E]]
+
== Function ==
 +
[https://www.uniprot.org/uniprot/DYP_AURAJ DYP_AURAJ] Manganese-independent peroxidase that is able to convert a large number of compounds, but its physiological substrate is not known. In addition to classic peroxidase substrates (e.g. 2,6-dimethoxyphenol), oxidizes dyes such as Reactive Blue 5 and Reactive Black 5.<ref>PMID:19756587</ref> <ref>PMID:23111597</ref> <ref>PMID:25153532</ref> <ref>PMID:25495127</ref> <ref>PMID:25542606</ref>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Auricularia auricula-judae]]
 +
[[Category: Large Structures]]
 +
[[Category: Piontek K]]
 +
[[Category: Plattner DA]]
 +
[[Category: Strittmatter E]]

Current revision

DyP-type peroxidase of Auricularia auricula-judae (AauDyPI) crystallized at pH 6.5

PDB ID 5ag0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools