This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
5nd1
From Proteopedia
(Difference between revisions)
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
==Viral evolution results in multiple, surface-allocated enzymatic activities in a fungal double-stranded RNA virus== | ==Viral evolution results in multiple, surface-allocated enzymatic activities in a fungal double-stranded RNA virus== | ||
| - | < | + | <SX load='5nd1' size='340' side='right' viewer='molstar' caption='[[5nd1]], [[Resolution|resolution]] 3.70Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5nd1]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[5nd1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rosellinia_necatrix_quadrivirus_1 Rosellinia necatrix quadrivirus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ND1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ND1 FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.7Å</td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5nd1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nd1 OCA], [https://pdbe.org/5nd1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5nd1 RCSB], [https://www.ebi.ac.uk/pdbsum/5nd1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5nd1 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/M1VMJ0_RNQV1 M1VMJ0_RNQV1] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Unlike their counterparts in bacterial and higher eukaryotic hosts, most fungal viruses are transmitted intracellularly and lack an extracellular phase. Here we determined the cryo-EM structure at 3.7 A resolution of Rosellinia necatrix quadrivirus 1 (RnQV1), a fungal double-stranded (ds)RNA virus. RnQV1, the type species of the family Quadriviridae, has a multipartite genome consisting of four monocistronic segments. Whereas most dsRNA virus capsids are based on dimers of a single protein, the ~450-A-diameter, T = 1 RnQV1 capsid is built of P2 and P4 protein heterodimers, each with more than 1000 residues. Despite a lack of sequence similarity between the two proteins, they have a similar alpha-helical domain, the structural signature shared with the lineage of the dsRNA bluetongue virus-like viruses. Domain insertions in P2 and P4 preferential sites provide additional functions at the capsid outer surface, probably related to enzyme activity. The P2 insertion has a fold similar to that of gelsolin and profilin, two actin-binding proteins with a function in cytoskeleton metabolism, whereas the P4 insertion suggests protease activity involved in cleavage of the P2 383-residue C-terminal region, absent in the mature viral particle. Our results indicate that the intimate virus-fungus partnership has altered the capsid genome-protective and/or receptor-binding functions. Fungal virus evolution has tended to allocate enzyme activities to the virus capsid outer surface. | ||
| + | |||
| + | Acquisition of functions on the outer capsid surface during evolution of double-stranded RNA fungal viruses.,Mata CP, Luque D, Gomez-Blanco J, Rodriguez JM, Gonzalez JM, Suzuki N, Ghabrial SA, Carrascosa JL, Trus BL, Caston JR PLoS Pathog. 2017 Dec 8;13(12):e1006755. doi: 10.1371/journal.ppat.1006755., eCollection 2017 Dec. PMID:29220409<ref>PMID:29220409</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 5nd1" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
| - | </ | + | </SX> |
| + | [[Category: Large Structures]] | ||
[[Category: Rosellinia necatrix quadrivirus 1]] | [[Category: Rosellinia necatrix quadrivirus 1]] | ||
| - | [[Category: | + | [[Category: Carrascosa JL]] |
| - | [[Category: | + | [[Category: Caston JR]] |
| - | [[Category: | + | [[Category: Ghabrial SA]] |
| - | [[Category: | + | [[Category: Gomez Blanco J]] |
| - | [[Category: Luque | + | [[Category: Luque D]] |
| - | [[Category: Mata | + | [[Category: Mata CP]] |
| - | [[Category: Rodriguez | + | [[Category: Rodriguez JM]] |
| - | [[Category: Suzuki | + | [[Category: Suzuki N]] |
| - | [[Category: Trus | + | [[Category: Trus BL]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Viral evolution results in multiple, surface-allocated enzymatic activities in a fungal double-stranded RNA virus
| |||||||||
