This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5nhi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:58, 15 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5nhi' size='340' side='right'caption='[[5nhi]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
<StructureSection load='5nhi' size='340' side='right'caption='[[5nhi]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5nhi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NHI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NHI FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5nhi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NHI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5NHI FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dsbD, EL75_4028, EL79_4206, EL80_4122 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protein-disulfide_reductase Protein-disulfide reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.1.8 1.8.1.8] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5nhi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nhi OCA], [https://pdbe.org/5nhi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5nhi RCSB], [https://www.ebi.ac.uk/pdbsum/5nhi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5nhi ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5nhi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nhi OCA], [http://pdbe.org/5nhi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5nhi RCSB], [http://www.ebi.ac.uk/pdbsum/5nhi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5nhi ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/A0A0A0GNS2_ECOLX A0A0A0GNS2_ECOLX]] Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps.[HAMAP-Rule:MF_00399]
+
[https://www.uniprot.org/uniprot/DSBD_ECOLI DSBD_ECOLI] Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm, thereby maintaining the active site of DsbC, DsbE and DsbG in a reduced state. This transfer involves a cascade of disulfide bond formation and reduction steps.[HAMAP-Rule:MF_00399]
==See Also==
==See Also==
-
*[[Thiol:disulfide interchange protein|Thiol:disulfide interchange protein]]
+
*[[Thiol:disulfide interchange protein 3D structures|Thiol:disulfide interchange protein 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus coli migula 1895]]
+
[[Category: Escherichia coli]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Protein-disulfide reductase]]
+
[[Category: Mavridou DAI]]
-
[[Category: Mavridou, D A.I]]
+
[[Category: Redfield C]]
-
[[Category: Redfield, C]]
+
[[Category: Saridakis E]]
-
[[Category: Saridakis, E]]
+
[[Category: Stelzl LS]]
-
[[Category: Stelzl, L S]]
+
-
[[Category: Electron transport]]
+
-
[[Category: Immunoglobulin-like fold]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Thiol disulfide oxidoreductase]]
+

Current revision

Crystal structure of the Escherichia coli N-terminal domain of DsbD (nDsbD) without the cap-loop region

PDB ID 5nhi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools