This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5nqd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:22, 15 November 2023) (edit) (undo)
 
Line 1: Line 1:
==Arsenite oxidase AioAB from Rhizobium sp. str. NT-26 mutant AioBF108A==
==Arsenite oxidase AioAB from Rhizobium sp. str. NT-26 mutant AioBF108A==
-
<StructureSection load='5nqd' size='340' side='right' caption='[[5nqd]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+
<StructureSection load='5nqd' size='340' side='right'caption='[[5nqd]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5nqd]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhizobium_sp._nt-26 Rhizobium sp. nt-26]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NQD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NQD FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5nqd]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudorhizobium_banfieldiae Pseudorhizobium banfieldiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NQD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5NQD FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4MO:MOLYBDENUM(IV)+ION'>4MO</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=F3S:FE3-S4+CLUSTER'>F3S</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE+GUANOSINE+DINUCLEOTIDE'>MGD</scene>, <scene name='pdbligand=O:OXYGEN+ATOM'>O</scene>, <scene name='pdbligand=P33:3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL'>P33</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4aay|4aay]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4MO:MOLYBDENUM(IV)+ION'>4MO</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=F3S:FE3-S4+CLUSTER'>F3S</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE+GUANOSINE+DINUCLEOTIDE'>MGD</scene>, <scene name='pdbligand=O:OXYGEN+ATOM'>O</scene>, <scene name='pdbligand=P33:3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL'>P33</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">aroA, aioA, NT26_p10030 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1125847 Rhizobium sp. NT-26]), aioB, NT26_p10029 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1125847 Rhizobium sp. NT-26])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5nqd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nqd OCA], [https://pdbe.org/5nqd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5nqd RCSB], [https://www.ebi.ac.uk/pdbsum/5nqd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5nqd ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Arsenate_reductase_(azurin) Arsenate reductase (azurin)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.20.9.1 1.20.9.1] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5nqd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nqd OCA], [http://pdbe.org/5nqd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5nqd RCSB], [http://www.ebi.ac.uk/pdbsum/5nqd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5nqd ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q6VAL8_9HYPH Q6VAL8_9HYPH]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Rhizobium sp. nt-26]]
+
[[Category: Large Structures]]
-
[[Category: Marques, A T]]
+
[[Category: Pseudorhizobium banfieldiae]]
-
[[Category: Romao, M]]
+
[[Category: Marques AT]]
-
[[Category: Santos-Silva, T]]
+
[[Category: Romao M]]
-
[[Category: Vieira, M]]
+
[[Category: Santos-Silva T]]
-
[[Category: Arsenite oxidase]]
+
[[Category: Vieira M]]
-
[[Category: Dmsor family]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Rieske protein]]
+

Current revision

Arsenite oxidase AioAB from Rhizobium sp. str. NT-26 mutant AioBF108A

PDB ID 5nqd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools