This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5xcv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:59, 22 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of NZ-1 Fv-clasp fragment with its antigen peptide==
==Crystal structure of NZ-1 Fv-clasp fragment with its antigen peptide==
-
<StructureSection load='5xcv' size='340' side='right' caption='[[5xcv]], [[Resolution|resolution]] 2.14&Aring;' scene=''>
+
<StructureSection load='5xcv' size='340' side='right'caption='[[5xcv]], [[Resolution|resolution]] 2.14&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5xcv]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XCV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5XCV FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5xcv]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Rattus Rattus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XCV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5XCV FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.143&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5xcx|5xcx]], [[5xcu|5xcu]], [[5xct|5xct]], [[5xcs|5xcs]], [[5xcr|5xcr]], [[5xcq|5xcq]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5xcv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xcv OCA], [http://pdbe.org/5xcv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5xcv RCSB], [http://www.ebi.ac.uk/pdbsum/5xcv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5xcv ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5xcv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xcv OCA], [https://pdbe.org/5xcv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5xcv RCSB], [https://www.ebi.ac.uk/pdbsum/5xcv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5xcv ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PDPN_HUMAN PDPN_HUMAN]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Arimori, T]]
+
[[Category: Homo sapiens]]
-
[[Category: Takagi, J]]
+
[[Category: Large Structures]]
-
[[Category: Antibody fragment]]
+
[[Category: Rattus]]
-
[[Category: Fv-clasp]]
+
[[Category: Arimori T]]
-
[[Category: Immune system]]
+
[[Category: Takagi J]]

Current revision

Crystal structure of NZ-1 Fv-clasp fragment with its antigen peptide

PDB ID 5xcv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5xcv"
Personal tools