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| | ==Crystal structure of a serine protease from Streptococcus species== | | ==Crystal structure of a serine protease from Streptococcus species== |
| - | <StructureSection load='5xyr' size='340' side='right' caption='[[5xyr]], [[Resolution|resolution]] 2.80Å' scene=''> | + | <StructureSection load='5xyr' size='340' side='right'caption='[[5xyr]], [[Resolution|resolution]] 2.80Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5xyr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"micrococcus_scarlatinae"_klein_1884 "micrococcus scarlatinae" klein 1884]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XYR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5XYR FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5xyr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pyogenes Streptococcus pyogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XYR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5XYR FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MLA:MALONIC+ACID'>MLA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8Å</td></tr> |
| - | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MLA:MALONIC+ACID'>MLA</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">scpC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1314 "Micrococcus scarlatinae" Klein 1884])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5xyr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xyr OCA], [https://pdbe.org/5xyr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5xyr RCSB], [https://www.ebi.ac.uk/pdbsum/5xyr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5xyr ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5xyr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xyr OCA], [http://pdbe.org/5xyr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5xyr RCSB], [http://www.ebi.ac.uk/pdbsum/5xyr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5xyr ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q3HV58_STRPY Q3HV58_STRPY] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Micrococcus scarlatinae klein 1884]] | + | [[Category: Large Structures]] |
| - | [[Category: Jobichen, C]] | + | [[Category: Streptococcus pyogenes]] |
| - | [[Category: Sivaraman, J]] | + | [[Category: Jobichen C]] |
| - | [[Category: Cell adhesion]] | + | [[Category: Sivaraman J]] |
| - | [[Category: Lyase]]
| + | |
| - | [[Category: Protease]]
| + | |
| - | [[Category: Subtilisin like]]
| + | |
| Structural highlights
5xyr is a 1 chain structure with sequence from Streptococcus pyogenes. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
| | Method: | X-ray diffraction, Resolution 2.8Å |
| Ligands: | , , , , |
| Resources: | FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT |
Function
Q3HV58_STRPY
Publication Abstract from PubMed
Group A Streptococcus (GAS; Streptococcus pyogenes) causes a wide range of infections, including pharyngitis, impetigo, and necrotizing fasciitis, and results in over half a million deaths annually. GAS ScpC (SpyCEP), a 180-kDa surface-exposed, subtilisin-like serine protease, that act as an essential virulence factor that helps S. pyogenes evade the innate immune response by cleaving and inactivating C-X-C chemokines. ScpC is thus a key candidate for the development of a vaccine against GAS and other pathogenic streptococcal species. Here, we report the crystal structures of full-length ScpC wild-type, the inactive mutant, and the ScpC-AEBSF inhibitor complex. We show ScpC to be a multi-domain, modular protein consisting of nine structural domains, of which the first five constitute the PR+A region required for catalytic activity. The four unique C-terminal domains of this protein are similar to collagen-binding and pilin proteins, suggesting an additional role for ScpC as an adhesin that might mediate the attachment of S. pyogenes to various host tissues. The Cat domain of ScpC is similar to subtilisin-like proteases with significant difference to dictate its specificity toward C-X-C chemokines. We further show that ScpC does not undergo structural rearrangement upon maturation. In the ScpC-inhibitor complex, the bound inhibitor breaks the hydrogen bond between active-site residues, which is essential for catalysis. Guided by our structure, we designed various epitopes and raised antibodies capable of neutralizing ScpC activity. Collectively, our results demonstrate the structure, maturation process, inhibition and substrate recognition of GAS ScpC, and reveals the presence of functional domains at the C-terminal region.
Structure of ScpC, a virulence protease from Streptococcus pyogenes , reveal the functional domains and maturation mechanism.,Jobichen C, Chong TY, Prabhakar MT, Nayak D, Biswas D, Pannu NS, Hanski E, Sivaraman J Biochem J. 2018 Jul 26. pii: BCJ20180145. doi: 10.1042/BCJ20180145. PMID:30049896[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Jobichen C, Chong TY, Prabhakar MT, Nayak D, Biswas D, Pannu NS, Hanski E, Sivaraman J. Structure of ScpC, a virulence protease from Streptococcus pyogenes , reveal the functional domains and maturation mechanism. Biochem J. 2018 Jul 26. pii: BCJ20180145. doi: 10.1042/BCJ20180145. PMID:30049896 doi:http://dx.doi.org/10.1042/BCJ20180145
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