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5y16

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Current revision

Crystal structure of human DUSP28(Y102H)

Structural highlights

5y16 is a 2 chain structure with sequence from Homo sapiens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 2.399Å
Ligands:	,
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

DUS28_HUMAN Has phosphatase activity with the synthetic substrate 6,8-difluoro-4-methylumbelliferyl phosphate (in vitro).^[1]

Publication Abstract from PubMed

Dual-specificity phosphatases (DUSPs) constitute a subfamily of protein tyrosine phosphatases, and are intimately involved in the regulation of diverse parameters of cellular signaling and essential biological processes. DUSP28 is one of the DUSP subfamily members that is known to be implicated in the progression of hepatocellular and pancreatic cancers, and its biological functions and enzymatic characteristics are mostly unknown. Herein, we present the crystal structure of human DUSP28 determined to 2.1 A resolution. DUSP28 adopts a typical DUSP fold, which is composed of a central beta-sheet covered by alpha-helices on both sides and contains a well-ordered activation loop, as do other enzymatically active DUSP proteins. The catalytic pocket of DUSP28, however, appears hardly accessible to a substrate because of the presence of nonconserved bulky residues in the protein tyrosine phosphatase signature motif. Accordingly, DUSP28 showed an atypically low phosphatase activity in the biochemical assay, which was remarkably improved by mutations of two nonconserved residues in the activation loop. Overall, this work reports the structural and biochemical basis for understanding a putative oncological therapeutic target, DUSP28, and also provides a unique mechanism for the regulation of enzymatic activity in the DUSP subfamily proteins.

Structural and biochemical analysis of atypically low dephosphorylating activity of human dual-specificity phosphatase 28.,Ku B, Hong W, Keum CW, Kim M, Ryu H, Jeon D, Shin HC, Kim JH, Kim SJ, Ryu SE PLoS One. 2017 Nov 9;12(11):e0187701. doi: 10.1371/journal.pone.0187701., eCollection 2017. PMID:29121083^[2]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Jeong DG, Wei CH, Ku B, Jeon TJ, Chien PN, Kim JK, Park SY, Hwang HS, Ryu SY, Park H, Kim DS, Kim SJ, Ryu SE. The family-wide structure and function of human dual-specificity protein phosphatases. Acta Crystallogr D Biol Crystallogr. 2014 Feb;70(Pt 2):421-35. doi:, 10.1107/S1399004713029866. Epub 2014 Jan 29. PMID:24531476 doi:http://dx.doi.org/10.1107/S1399004713029866
↑ Ku B, Hong W, Keum CW, Kim M, Ryu H, Jeon D, Shin HC, Kim JH, Kim SJ, Ryu SE. Structural and biochemical analysis of atypically low dephosphorylating activity of human dual-specificity phosphatase 28. PLoS One. 2017 Nov 9;12(11):e0187701. doi: 10.1371/journal.pone.0187701., eCollection 2017. PMID:29121083 doi:http://dx.doi.org/10.1371/journal.pone.0187701

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5y16"

@@ Line 3: / Line 3: @@
 <StructureSection load='5y16' size='340' side='right'caption='[[5y16]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5y16]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y16 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5Y16 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5y16]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y16 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5Y16 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.399&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5y15|5y15]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5y16 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y16 OCA], [http://pdbe.org/5y16 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y16 RCSB], [http://www.ebi.ac.uk/pdbsum/5y16 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y16 ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5y16 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y16 OCA], [https://pdbe.org/5y16 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5y16 RCSB], [https://www.ebi.ac.uk/pdbsum/5y16 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5y16 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/DUS28_HUMAN DUS28_HUMAN]] Has phosphatase activity with the synthetic substrate 6,8-difluoro-4-methylumbelliferyl phosphate (in vitro).<ref>PMID:24531476</ref>
+[https://www.uniprot.org/uniprot/DUS28_HUMAN DUS28_HUMAN] Has phosphatase activity with the synthetic substrate 6,8-difluoro-4-methylumbelliferyl phosphate (in vitro).<ref>PMID:24531476</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 26: / Line 26: @@
 __TOC__
 </StructureSection>
+[[Category: Homo sapiens]]
 [[Category: Large Structures]]
-[[Category: Kim, M]]
+[[Category: Kim M]]
-[[Category: Kim, S J]]
+[[Category: Kim SJ]]
-[[Category: Ku, B]]
+[[Category: Ku B]]
-[[Category: Ryu, S E]]
+[[Category: Ryu SE]]
-[[Category: Dual-specificity phosphatase]]
-[[Category: Dusp]]
-[[Category: Dusp28]]
-[[Category: Hydrolase]]
-[[Category: Protein tyrosine phosphatase]]
-[[Category: Ptp]]

5y16

From Proteopedia

Current revision

Crystal structure of human DUSP28(Y102H)

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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