This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5yne

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:33, 22 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of Pullulanase from Klebsiella pneumoniae complex at 10 mM alpha-cyclodextrin==
==Crystal structure of Pullulanase from Klebsiella pneumoniae complex at 10 mM alpha-cyclodextrin==
-
<StructureSection load='5yne' size='340' side='right' caption='[[5yne]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+
<StructureSection load='5yne' size='340' side='right'caption='[[5yne]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5yne]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Klebsiella_pneumoniae Klebsiella pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YNE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YNE FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5yne]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_pneumoniae Klebsiella pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YNE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5YNE FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.199&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yne FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yne OCA], [http://pdbe.org/5yne PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yne RCSB], [http://www.ebi.ac.uk/pdbsum/5yne PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yne ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PRD_900015:alpha-cyclodextrin'>PRD_900015</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5yne FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yne OCA], [https://pdbe.org/5yne PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5yne RCSB], [https://www.ebi.ac.uk/pdbsum/5yne PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5yne ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/W9BQ28_KLEPN W9BQ28_KLEPN]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 24:
</StructureSection>
</StructureSection>
[[Category: Klebsiella pneumoniae]]
[[Category: Klebsiella pneumoniae]]
-
[[Category: Iwamoto, H]]
+
[[Category: Large Structures]]
-
[[Category: Mikami, B]]
+
[[Category: Iwamoto H]]
-
[[Category: Mizutani, K]]
+
[[Category: Mikami B]]
-
[[Category: Saka, N]]
+
[[Category: Mizutani K]]
-
[[Category: Takahashi, N]]
+
[[Category: Saka N]]
-
[[Category: Alpha-amylase]]
+
[[Category: Takahashi N]]
-
[[Category: Alpha-cyclodextrin]]
+
-
[[Category: Co-crystallization]]
+
-
[[Category: Crystal]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Pullulanase]]
+

Current revision

Crystal structure of Pullulanase from Klebsiella pneumoniae complex at 10 mM alpha-cyclodextrin

PDB ID 5yne

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools