This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5yoc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:34, 22 November 2023) (edit) (undo)
 
Line 1: Line 1:
==Crystal Structure of flavodoxin with engineered disulfide bond C102-R125C==
==Crystal Structure of flavodoxin with engineered disulfide bond C102-R125C==
-
<StructureSection load='5yoc' size='340' side='right' caption='[[5yoc]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
+
<StructureSection load='5yoc' size='340' side='right'caption='[[5yoc]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5yoc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desvh Desvh]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YOC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YOC FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5yoc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._Hildenborough Desulfovibrio vulgaris str. Hildenborough]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YOC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5YOC FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5yob|5yob]], [[5yog|5yog]], [[5yoe|5yoe]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DVU_2680 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=882 DESVH])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5yoc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yoc OCA], [https://pdbe.org/5yoc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5yoc RCSB], [https://www.ebi.ac.uk/pdbsum/5yoc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5yoc ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yoc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yoc OCA], [http://pdbe.org/5yoc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yoc RCSB], [http://www.ebi.ac.uk/pdbsum/5yoc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yoc ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/FLAV_DESVH FLAV_DESVH]] Low-potential electron donor to a number of redox enzymes.
+
[https://www.uniprot.org/uniprot/FLAV_DESVH FLAV_DESVH] Low-potential electron donor to a number of redox enzymes.
==See Also==
==See Also==
-
*[[Flavodoxin|Flavodoxin]]
+
*[[Flavodoxin 3D structures|Flavodoxin 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Desvh]]
+
[[Category: Desulfovibrio vulgaris str. Hildenborough]]
-
[[Category: Liu, Z J]]
+
[[Category: Large Structures]]
-
[[Category: Pu, M]]
+
[[Category: Liu ZJ]]
-
[[Category: Song, G]]
+
[[Category: Pu M]]
-
[[Category: Xu, Z]]
+
[[Category: Song G]]
-
[[Category: Electron transport]]
+
[[Category: Xu Z]]
-
[[Category: Fmn binding protein]]
+
-
[[Category: Fusion partner]]
+
-
[[Category: Oxidation]]
+

Current revision

Crystal Structure of flavodoxin with engineered disulfide bond C102-R125C

PDB ID 5yoc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools