This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.

6jb0

From Proteopedia

(Difference between revisions)

Jump to: navigation, search

Current revision

Crystal structure of ABC transporter alpha-glycoside-binding mutant protein W287A in complex with trehalose

Structural highlights

6jb0 is a 1 chain structure with sequence from Thermus thermophilus HB8. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 1.63Å
Ligands:	, , , , ,
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q5SLD7_THET8

Publication Abstract from PubMed

Carbohydrate (or sugar) molecules are extremely diverse regarding their length, linkage and epimeric state. Selective acquisition of these molecules inside the cell is achieved by the substrate (or solute)-binding protein of ATP-binding cassette (ABC) transport system. However, the molecular mechanism underlying the selective transport of diverse carbohydrates remains unclear mainly owing to their structural complexity and stereochemistry. This study reports crystal structures of an alpha-glycoside-binding protein (alphaGlyBP, ORF ID: TTHA0356 from Thermus thermophilus HB8) in complex with disaccharide alpha-glycosides namely trehalose (alpha-1,1), sucrose (alpha-1,2), maltose (alpha-1,4), palatinose (alpha-1,6) and glucose within a resolution range of 1.6 to 2.0 A. Despite transporting multiple types of sugars, alphaGlyBP maintains its stereoselectivity for both glycosidic linkage as well as an epimeric hydroxyl group. Out of the two subsites identified in the active-site pocket, subsite B which accommodates the glucose and glycosyl unit of disaccharide alpha-glycosides is highly conserved. In addition, structural data confirms the paradoxical behavior of glucose, where it replaces the high-affinity ligand(s) (disaccharide alpha-glycosides) from the active site of the protein. Comparative assessment of open and closed conformations of alphaGlyBP along with mutagenic and thermodynamic studies identifies the hinge region as the first interaction site for the ligands. On the other hand, encapsulation of ligand inside the active site is achieved through the N-terminal domain (NTD) movement, whereas the C-terminal domain (CTD) of alphaGlyBP is identified to be rigid and postulated to be responsible for maintaining the interaction with the transmembrane domain (TMD) during substrate translocation.

Structural and thermodynamic correlation illuminates the selective transport mechanism of disaccharide alpha-glycosides through ABC transporter.,Chandravanshi M, Gogoi P, Kanaujia SP FEBS J. 2019 Oct 14. doi: 10.1111/febs.15093. PMID:31608555^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Chandravanshi M, Gogoi P, Kanaujia SP. Structural and thermodynamic correlation illuminates the selective transport mechanism of disaccharide alpha-glycosides through ABC transporter. FEBS J. 2019 Oct 14. doi: 10.1111/febs.15093. PMID:31608555 doi:http://dx.doi.org/10.1111/febs.15093

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6jb0"

Categories: Large Structures | Thermus thermophilus HB8 | Chandravanshi M | Gogoi P | Kanaujia SP

@@ Line 3: / Line 3: @@
 <StructureSection load='6jb0' size='340' side='right'caption='[[6jb0]], [[Resolution|resolution]] 1.63&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[6jb0]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JB0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JB0 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[6jb0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JB0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JB0 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PDO:1,3-PROPANDIOL'>PDO</scene>, <scene name='pdbligand=TRE:TREHALOSE'>TRE</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.63&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6jb0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jb0 OCA], [http://pdbe.org/6jb0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jb0 RCSB], [http://www.ebi.ac.uk/pdbsum/6jb0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jb0 ProSAT]</span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PDO:1,3-PROPANDIOL'>PDO</scene>, <scene name='pdbligand=PRD_900006:trehalose'>PRD_900006</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jb0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jb0 OCA], [https://pdbe.org/6jb0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jb0 RCSB], [https://www.ebi.ac.uk/pdbsum/6jb0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jb0 ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q5SLD7_THET8 Q5SLD7_THET8]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 21: / Line 24: @@
 </StructureSection>
 [[Category: Large Structures]]
-[[Category: Chandravanshi, M]]
+[[Category: Thermus thermophilus HB8]]
-[[Category: Gogoi, P]]
+[[Category: Chandravanshi M]]
-[[Category: Kanaujia, S P]]
+[[Category: Gogoi P]]
-[[Category: Alpha-glycoside-binding protein]]
+[[Category: Kanaujia SP]]
-[[Category: Carbohydrate-bindingsite]]
-[[Category: Ligand selection]]
-[[Category: Multi-substrate transporter]]
-[[Category: Sugar binding protein]]
-[[Category: Sugar replacement]]
-[[Category: Venus fly-trap mechanism]]

6jb0

From Proteopedia

Current revision

Crystal structure of ABC transporter alpha-glycoside-binding mutant protein W287A in complex with trehalose

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox