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6jcl

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(New page: '''Unreleased structure''' The entry 6jcl is ON HOLD Authors: Kim, J., Lee, S. Description: Crystal structure of cofactor-bound Rv0187 from MTB Category: Unreleased Structures [[Ca...)
Current revision (10:06, 22 November 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 6jcl is ON HOLD
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==Crystal structure of cofactor-bound Rv0187 from MTB==
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<StructureSection load='6jcl' size='340' side='right'caption='[[6jcl]], [[Resolution|resolution]] 1.64&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6jcl]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Rv Mycobacterium tuberculosis H37Rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JCL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JCL FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.644&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene>, <scene name='pdbligand=SR:STRONTIUM+ION'>SR</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jcl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jcl OCA], [https://pdbe.org/6jcl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jcl RCSB], [https://www.ebi.ac.uk/pdbsum/6jcl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jcl ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CAMT_MYCTU CAMT_MYCTU] Catechol O-methyltransferase that can use various catechol-like compounds such as gallic acid (GA), 3,4-dihydroxy-5-methoxy-benzoic acid (5OMeBA), protocatechuic acid (PCA), 3,4-dihydroxy-benzaldehyde (DHA), dopamine, caffeic acid (CA), luteolin, quercetin, and 5-hydroxyuridine.<ref>PMID:31147608</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Catechol O-methyltransferase (COMT) is widely distributed in nature and installs a methyl group onto one of the vicinal hydroxyl groups of a catechol derivative. Enzymes belonging to this family require two cofactors for methyl transfer: S-adenosyl-l-methionine as a methyl donor and a divalent metal cation for regiospecific binding and activation of a substrate. We have determined two high-resolution crystal structures of Rv0187, one of three COMT paralogs from Mycobacterium tuberculosis, in the presence and absence of cofactors. The cofactor-bound structure clearly locates strontium ions and S-adenosyl-l-homocysteine in the active site, and together with the complementary structure of the ligand-free form, it suggests conformational dynamics induced by the binding of cofactors. Examination of in vitro activities revealed promiscuous substrate specificity and relaxed regioselectivity against various catechol-like compounds. Unexpectedly, mutation of the proposed catalytic lysine residue did not abolish activity but altered the overall landscape of regiospecific methylation.
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Authors: Kim, J., Lee, S.
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Structural and biochemical characterization of Rv0187, an O-methyltransferase from Mycobacterium tuberculosis.,Lee S, Kang J, Kim J Sci Rep. 2019 May 30;9(1):8059. doi: 10.1038/s41598-019-44592-7. PMID:31147608<ref>PMID:31147608</ref>
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Description: Crystal structure of cofactor-bound Rv0187 from MTB
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Lee, S]]
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<div class="pdbe-citations 6jcl" style="background-color:#fffaf0;"></div>
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[[Category: Kim, J]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Mycobacterium tuberculosis H37Rv]]
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[[Category: Kim J]]
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[[Category: Lee S]]

Current revision

Crystal structure of cofactor-bound Rv0187 from MTB

PDB ID 6jcl

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