This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
6jev
From Proteopedia
(Difference between revisions)
| (2 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | '''Unreleased structure''' | ||
| - | + | ==K2U bound crystal structure of class I type a peptide deformylase from Acinetobacter baumanii== | |
| - | + | <StructureSection load='6jev' size='340' side='right'caption='[[6jev]], [[Resolution|resolution]] 1.90Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[6jev]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_baumannii_MRSN_3527 Acinetobacter baumannii MRSN 3527]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JEV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JEV FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9Å</td></tr> | |
| - | [[Category: | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K2U:(3~{R},4~{R})-4-oxidanyl-3-(phenylmethyl)-4-(phenylmethylsulfanyl)butanoic+acid'>K2U</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
| - | [[Category: | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jev FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jev OCA], [https://pdbe.org/6jev PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jev RCSB], [https://www.ebi.ac.uk/pdbsum/6jev PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jev ProSAT]</span></td></tr> |
| - | [[Category: Ho | + | </table> |
| - | [[Category: Kang | + | == Function == |
| + | [https://www.uniprot.org/uniprot/DEF_ACIBS DEF_ACIBS] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Acinetobacter baumannii MRSN 3527]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Ho TH]] | ||
| + | [[Category: Kang LW]] | ||
| + | [[Category: Lee IH]] | ||
Current revision
K2U bound crystal structure of class I type a peptide deformylase from Acinetobacter baumanii
| |||||||||||
