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6ldc

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Current revision (10:57, 22 November 2023) (edit) (undo)
 
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<StructureSection load='6ldc' size='340' side='right'caption='[[6ldc]], [[Resolution|resolution]] 2.18&Aring;' scene=''>
<StructureSection load='6ldc' size='340' side='right'caption='[[6ldc]], [[Resolution|resolution]] 2.18&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6ldc]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bifdb Bifdb]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LDC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6LDC FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6ldc]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bifidobacterium_dentium_Bd1 Bifidobacterium dentium Bd1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LDC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6LDC FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=E9O:(2~{S},3~{S},4~{R},5~{R})-2-nonyl-4,5-bis(oxidanyl)piperidine-3-carboxylic+acid'>E9O</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.181&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lacZ1, BDP_2112 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=401473 BIFDB])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=E9O:(2~{S},3~{S},4~{R},5~{R})-2-nonyl-4,5-bis(oxidanyl)piperidine-3-carboxylic+acid'>E9O</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Beta-galactosidase Beta-galactosidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.23 3.2.1.23] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ldc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ldc OCA], [https://pdbe.org/6ldc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ldc RCSB], [https://www.ebi.ac.uk/pdbsum/6ldc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ldc ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ldc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ldc OCA], [https://pdbe.org/6ldc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ldc RCSB], [https://www.ebi.ac.uk/pdbsum/6ldc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ldc ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/D2Q7B1_BIFDB D2Q7B1_BIFDB]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Beta-galactosidase]]
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[[Category: Bifidobacterium dentium Bd1]]
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[[Category: Bifdb]]
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[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Hsieh, T J]]
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[[Category: Hsieh T-J]]
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[[Category: Lin, C H]]
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[[Category: Lin C-H]]
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[[Category: Lin, H Y]]
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[[Category: Lin H-Y]]
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[[Category: Glycosidase]]
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[[Category: Hydrolase]]
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[[Category: Inhibitor]]
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[[Category: Isofagomine]]
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Current revision

Structure of Bifidobacterium dentium beta-glucuronidase complexed with C6-nonyl uronic isofagomine

PDB ID 6ldc

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