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1b3p
From Proteopedia
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| - | [[Image:1b3p.gif|left|200px]]<br /><applet load="1b3p" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="1b3p" /> | ||
| - | '''5'-D(*GP*GP*AP*GP*GP*AP*T)-3''''<br /> | ||
| - | == | + | ==5'-D(*GP*GP*AP*GP*GP*AP*T)-3'== |
| + | <StructureSection load='1b3p' size='340' side='right'caption='[[1b3p]]' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[1b3p]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B3P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1B3P FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1b3p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b3p OCA], [https://pdbe.org/1b3p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1b3p RCSB], [https://www.ebi.ac.uk/pdbsum/1b3p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1b3p ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
BACKGROUND: Triplet repeat sequences are of considerable biological importance as the expansion of such tandem arrays can lead to the onset of a range of human diseases. Such sequences can self-pair via mismatch alignments to form higher order structures that have the potential to cause replication blocks, followed by strand slippage and sequence expansion. The all-purine d(GGA)n triplet repeat sequence is of particular interest because purines can align via G.G, A.A and G.A mismatch formation. RESULTS: We have solved the structure of the uniformly 13C,15N-labeled d(G1-G2-A3-G4-G5-A6-T7) sequence in 10 mM Na+ solution. This sequence adopts a novel twofold-symmetric duplex fold where interlocked V-shaped arrowhead motifs are aligned solely via interstrand G1.G4, G2.G5 and A3.A6 mismatch formation. The tip of the arrowhead motif is centered about the p-A3-p step, and symmetry-related local parallel-stranded duplex domains are formed by the G1-G2-A3 and G4-G5-A6 segments of partner strands. CONCLUSIONS: The purine-rich (GGA)n triplet repeat sequence is dispersed throughout the eukaryotic genome. Several features of the arrowhead duplex motif for the (GGA)2 triplet repeat provide a unique scaffold for molecular recognition. These include the large localized bend in the sugar-phosphate backbones, the segmental parallel-stranded alignment of strands and the exposure of the Watson-Crick edges of several mismatched bases. | BACKGROUND: Triplet repeat sequences are of considerable biological importance as the expansion of such tandem arrays can lead to the onset of a range of human diseases. Such sequences can self-pair via mismatch alignments to form higher order structures that have the potential to cause replication blocks, followed by strand slippage and sequence expansion. The all-purine d(GGA)n triplet repeat sequence is of particular interest because purines can align via G.G, A.A and G.A mismatch formation. RESULTS: We have solved the structure of the uniformly 13C,15N-labeled d(G1-G2-A3-G4-G5-A6-T7) sequence in 10 mM Na+ solution. This sequence adopts a novel twofold-symmetric duplex fold where interlocked V-shaped arrowhead motifs are aligned solely via interstrand G1.G4, G2.G5 and A3.A6 mismatch formation. The tip of the arrowhead motif is centered about the p-A3-p step, and symmetry-related local parallel-stranded duplex domains are formed by the G1-G2-A3 and G4-G5-A6 segments of partner strands. CONCLUSIONS: The purine-rich (GGA)n triplet repeat sequence is dispersed throughout the eukaryotic genome. Several features of the arrowhead duplex motif for the (GGA)2 triplet repeat provide a unique scaffold for molecular recognition. These include the large localized bend in the sugar-phosphate backbones, the segmental parallel-stranded alignment of strands and the exposure of the Watson-Crick edges of several mismatched bases. | ||
| - | + | Interlocked mismatch-aligned arrowhead DNA motifs.,Kettani A, Bouaziz S, Skripkin E, Majumdar A, Wang W, Jones RA, Patel DJ Structure. 1999 Jul 15;7(7):803-15. PMID:10425682<ref>PMID:10425682</ref> | |
| - | + | ||
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | + | </div> | |
| - | [[Category: | + | <div class="pdbe-citations 1b3p" style="background-color:#fffaf0;"></div> |
| - | [[Category: Bouaziz | + | == References == |
| - | [[Category: Jones | + | <references/> |
| - | [[Category: Kettani | + | __TOC__ |
| - | [[Category: Majumdar | + | </StructureSection> |
| - | [[Category: Patel | + | [[Category: Large Structures]] |
| - | [[Category: Skripkin | + | [[Category: Bouaziz S]] |
| - | [[Category: Wang | + | [[Category: Jones RA]] |
| - | + | [[Category: Kettani A]] | |
| - | + | [[Category: Majumdar A]] | |
| - | + | [[Category: Patel DJ]] | |
| - | + | [[Category: Skripkin E]] | |
| - | + | [[Category: Wang W]] | |
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Current revision
5'-D(*GP*GP*AP*GP*GP*AP*T)-3'
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Categories: Large Structures | Bouaziz S | Jones RA | Kettani A | Majumdar A | Patel DJ | Skripkin E | Wang W
