This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5ny8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:15, 22 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5ny8' size='340' side='right'caption='[[5ny8]], [[Resolution|resolution]] 2.04&Aring;' scene=''>
<StructureSection load='5ny8' size='340' side='right'caption='[[5ny8]], [[Resolution|resolution]] 2.04&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5ny8]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NY8 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5NY8 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5ny8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermobifida_fusca Thermobifida fusca]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NY8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5NY8 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AGU:AMINOGUANIDINE'>AGU</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.04&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CBV:5-BROMOCYTIDINE+5-(DIHYDROGEN+PHOSPHATE)'>CBV</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AGU:AMINOGUANIDINE'>AGU</scene>, <scene name='pdbligand=CBV:5-BROMOCYTIDINE+5-(DIHYDROGEN+PHOSPHATE)'>CBV</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5ny8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ny8 OCA], [http://pdbe.org/5ny8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ny8 RCSB], [http://www.ebi.ac.uk/pdbsum/5ny8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ny8 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ny8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ny8 OCA], [https://pdbe.org/5ny8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ny8 RCSB], [https://www.ebi.ac.uk/pdbsum/5ny8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ny8 ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 17: Line 17:
</div>
</div>
<div class="pdbe-citations 5ny8" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5ny8" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Riboswitch 3D structures|Riboswitch 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 22: Line 25:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Huang, L]]
+
[[Category: Thermobifida fusca]]
-
[[Category: Lilley, D M.J]]
+
[[Category: Huang L]]
-
[[Category: Wang, J]]
+
[[Category: Lilley DMJ]]
-
[[Category: Gene regulation]]
+
[[Category: Wang J]]
-
[[Category: Guanidine iii riboswitch]]
+
-
[[Category: Pseudoknot]]
+
-
[[Category: Rna]]
+
-
[[Category: Stem-loop]]
+

Current revision

The structure of the thermobifida fusca guanidine III riboswitch with aminoguanidine

PDB ID 5ny8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5ny8"
Personal tools