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6ltg

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(New page: '''Unreleased structure''' The entry 6ltg is ON HOLD Authors: Nishimura, M., Krisdianto, D.N., Kato, T., Tjan, L.H., Wang, B., Wakata, A., Poetranto, A.L., Kawabata, A., Tang, H., Aoshi...)
Current revision (14:51, 29 November 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 6ltg is ON HOLD
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==Crystal structure of the Fab fragment of murine monoclonal antibody OHV-3 against Human herpesvirus 6B==
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<StructureSection load='6ltg' size='340' side='right'caption='[[6ltg]], [[Resolution|resolution]] 1.63&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6ltg]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LTG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6LTG FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.63&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ltg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ltg OCA], [https://pdbe.org/6ltg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ltg RCSB], [https://www.ebi.ac.uk/pdbsum/6ltg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ltg ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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A unique glycoprotein is expressed on the virus envelope of human herpesvirus 6B (HHV-6B): the complex gH/gL/gQ1/gQ2 (hereafter referred to as the HHV-6B tetramer). This tetramer recognizes a host receptor expressed on activated T cells: human CD134 (hCD134). This interaction is essential for HHV-6B entry into the susceptible cells and is a determinant for HHV-6B cell tropism. The structural mechanisms underlying this unique interaction were unknown. Herein we solved the interactions between the HHV-6B tetramer and the receptor by using their neutralizing antibodies in molecular and structural analyses. A surface plasmon resonance analysis revealed fast dissociation/association between the tetramer and hCD134, although the affinity was high (KD = 18 nM) and comparable to those for the neutralizing antibodies (anti-gQ1: 17 nM, anti-gH: 2.7 nM). A competition assay demonstrated that the anti-gQ1 antibody competed with hCD134 in the HHV-6B tetramer binding whereas the anti-gH antibody did not, indicating the direct interaction of gQ1 and hCD134. A single-particle analysis by negative-staining electron microscopy revealed the tetramer's elongated shape with a gH/gL part and extra density corresponding to gQ1/gQ2. The anti-gQ1 antibody bound to the tip of the extra density, and anti-gH antibody bound to the putative gH/gL part. These results highlight the interaction of gQ1/gQ2 in the HHV-6B tetramer with hCD134, and they demonstrate common features among viral ligands of the betaherpesvirus subfamily from a macroscopic viewpoint.
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Authors: Nishimura, M., Krisdianto, D.N., Kato, T., Tjan, L.H., Wang, B., Wakata, A., Poetranto, A.L., Kawabata, A., Tang, H., Aoshi, T., Mori, Y.
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Structural basis for the interaction of human herpesvirus 6B tetrameric glycoprotein complex with the cellular receptor, human CD134.,Nishimura M, Novita BD, Kato T, Handayani Tjan L, Wang B, Wakata A, Lystia Poetranto A, Kawabata A, Tang H, Aoshi T, Mori Y PLoS Pathog. 2020 Jul 17;16(7):e1008648. doi: 10.1371/journal.ppat.1008648., eCollection 2020 Jul. PMID:32678833<ref>PMID:32678833</ref>
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Description: Crystal structure of the Fab fragment of murine monoclonal antibody KH-1 against Human herpesvirus 6B
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Wakata, A]]
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<div class="pdbe-citations 6ltg" style="background-color:#fffaf0;"></div>
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[[Category: Kawabata, A]]
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[[Category: Wang, B]]
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==See Also==
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[[Category: Kato, T]]
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*[[Monoclonal Antibodies 3D structures|Monoclonal Antibodies 3D structures]]
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[[Category: Aoshi, T]]
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== References ==
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[[Category: Poetranto, A.L]]
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<references/>
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[[Category: Krisdianto, D.N]]
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__TOC__
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[[Category: Mori, Y]]
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</StructureSection>
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[[Category: Nishimura, M]]
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[[Category: Large Structures]]
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[[Category: Tang, H]]
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[[Category: Mus musculus]]
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[[Category: Tjan, L.H]]
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[[Category: Aoshi T]]
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[[Category: Kato T]]
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[[Category: Kawabata A]]
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[[Category: Mori Y]]
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[[Category: Nishimura M]]
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[[Category: Novita BD]]
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[[Category: Poetranto AL]]
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[[Category: Tang H]]
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[[Category: Tjan LH]]
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[[Category: Wakata A]]
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[[Category: Wang B]]

Current revision

Crystal structure of the Fab fragment of murine monoclonal antibody OHV-3 against Human herpesvirus 6B

PDB ID 6ltg

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