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6luh
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 6luh is ON HOLD Authors: Oda, K., Matoba, Y. Description: High resolution structure of N(omega)-hydroxy-L-arginine hydrolase [[Category: Unreleased...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==High resolution structure of N(omega)-hydroxy-L-arginine hydrolase== | |
| + | <StructureSection load='6luh' size='340' side='right'caption='[[6luh]], [[Resolution|resolution]] 1.50Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[6luh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_lavendulae Streptomyces lavendulae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LUH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6LUH FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6luh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6luh OCA], [https://pdbe.org/6luh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6luh RCSB], [https://www.ebi.ac.uk/pdbsum/6luh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6luh ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/DCSB_STRLA DCSB_STRLA] Involved in the biosynthesis of the antibiotic D-cycloserine (DCS), a cyclic structural analog of D-alanine, used as an antitubercular agent. Catalyzes the hydrolysis of N(omega)-hydroxy-L-arginine (NHA) to yield hydroxyurea (HU) and L-ornithine.<ref>PMID:20086163</ref> <ref>PMID:22547619</ref> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | DcsB, one of the enzymes encoded in the D-cycloserine (D-CS) biosynthetic gene cluster, displays a high sequence homology to arginase, which contains two manganese ions in the active site. However, DcsB hydrolyzes N(omega)-hydroxy-L-arginine, but not L-arginine, to supply hydroxyurea for the biosynthesis of D-CS. Here, the crystal structure of DcsB was determined at a resolution of 1.5 A using anomalous scattering from the manganese ions. In the crystal structure, DscB generates an artificial dimer created by the open and closed forms. Gel-filtration analysis demonstrated that DcsB is a monomeric protein, unlike arginase, which forms a trimeric structure. The active center containing the binuclear manganese cluster differs between DcsB and arginase. In DcsB, one of the ligands of the MnA ion is a cysteine, while the corresponding residue in arginase is a histidine. In addition, DcsB has no counterpart to the histidine residue that acts as a general acid/base during the catalytic reaction of arginase. The present study demonstrates that DcsB has a unique active site that differs from that of arginase. | ||
| - | + | Crystal structure of an N(omega)-hydroxy-L-arginine hydrolase found in the D-cycloserine biosynthetic pathway.,Oda K, Shimotani N, Kuroda T, Matoba Y Acta Crystallogr D Struct Biol. 2020 Jun 1;76(Pt 6):506-514. doi:, 10.1107/S2059798320004908. Epub 2020 May 29. PMID:32496212<ref>PMID:32496212</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 6luh" style="background-color:#fffaf0;"></div> |
| - | [[Category: Matoba | + | == References == |
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Streptomyces lavendulae]] | ||
| + | [[Category: Matoba Y]] | ||
| + | [[Category: Oda K]] | ||
Current revision
High resolution structure of N(omega)-hydroxy-L-arginine hydrolase
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