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7enb

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Current revision (16:57, 29 November 2023) (edit) (undo)
 
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<StructureSection load='7enb' size='340' side='right'caption='[[7enb]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
<StructureSection load='7enb' size='340' side='right'caption='[[7enb]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[7enb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspn1 Aspn1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ENB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ENB FirstGlance]. <br>
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<table><tr><td colspan='2'>[[7enb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_novofumigatus_IBT_16806 Aspergillus novofumigatus IBT 16806]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ENB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ENB FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=H3X:methyl+(3~{a}~{R},4~{S},5~{S},5~{a}~{S},6~{S},7~{S},9~{a}~{R})-1,1,3~{a},4,5~{a},7,7-heptamethyl-3,6-bis(oxidanylidene)spiro[4,5,7,8,9,9~{a}-hexahydrobenzo[c]oxepine-6,2-4,5-dihydro-3~{H}-1-benzofuran]-5-carboxylate'>H3X</scene>, <scene name='pdbligand=OGA:N-OXALYLGLYCINE'>OGA</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=H3X:methyl+(3~{a}~{R},4~{S},5~{S},5~{a}~{S},6~{S},7~{S},9~{a}~{R})-1,1,3~{a},4,5~{a},7,7-heptamethyl-3,6-bis(oxidanylidene)spiro[4,5,7,8,9,9~{a}-hexahydrobenzo[c]oxepine-6,2-4,5-dihydro-3~{H}-1-benzofuran]-5-carboxylate'>H3X</scene>, <scene name='pdbligand=OGA:N-OXALYLGLYCINE'>OGA</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7enb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7enb OCA], [https://pdbe.org/7enb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7enb RCSB], [https://www.ebi.ac.uk/pdbsum/7enb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7enb ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7enb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7enb OCA], [https://pdbe.org/7enb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7enb RCSB], [https://www.ebi.ac.uk/pdbsum/7enb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7enb ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/NVFI_ASPN1 NVFI_ASPN1] Fe(II)/2-oxoglutarate-dependent dioxygenase; part of the gene cluster that mediates the biosynthesis of novofumigatonin, a heavily oxygenated meroterpenoid containing a unique orthoester moiety (PubMed:29968715). The first step of the pathway is the synthesis of 3,5-dimethylorsellinic acid (DMOA) by the polyketide synthase nvfA via condensation of one acetyl-CoA starter unit with 3 malonyl-CoA units and 2 methylations (PubMed:29968715). DMOA is then converted to farnesyl-DMOA by the farnesyltransferase nvfB (PubMed:29968715). Epoxydation by FAD-dependent monooxygenase nvfK, followed by a protonation-initiated cyclization catalyzed by the terpene cyclase nvfL leads to the production of asnavolin H (PubMed:29968715). The short chain dehydrogenase nvfC then as a 3-OH dehydrogenase of asnovolin H to yield chemesin D (PubMed:29968715). There are two branches to synthesize asnovolin A from chemesin D (PubMed:29968715). In one branch, chemesin D undergoes Baeyer-Villiger oxidation by nvfH, methylation by nvfJ, and enoyl reduction by the nvfM D enoylreductase that reduces the double bond between C-5'and C-6', to form respectively asnovolin I, asnovolin K, and asnovolin A (PubMed:29968715). In the other branch, the methylation precedes the Baeyer-Villiger oxidation and the enoyl reduction to yield asnovolin A via the asnovolin J intermediate (PubMed:29968715). Asnovolin A is further converted to fumigatonoid A by the Fe(II)/2-oxoglutarate-dependent dioxygenase nvfI that catalyzes an endoperoxidation reaction (PubMed:29968715). The alpha/beta hydrolase nvfD then acts as an epimerase that converts fumigatonoid A to its C-5' epimer, which then undergoes spontaneous or nvfD-catalyzed lactonization (PubMed:29968715). The following step utilizes the ketoreductase nvfG to produce fumigatonoid B (PubMed:29968715). The dioxygenase nvfE further converts fumigatonoid B into fumigatonoid C (PubMed:29968715). Finally the Fe(II)/2-oxoglutarate-dependent dioxygenase nvfF catalyzes two rounds of oxidation to transform fumigatonoid C into the end product, novofumigatonin A (PubMed:29968715).<ref>PMID:29968715</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Aspn1]]
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[[Category: Aspergillus novofumigatus IBT 16806]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Abe, I]]
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[[Category: Abe I]]
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[[Category: Mori, T]]
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[[Category: Mori T]]
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[[Category: Endoperoxidase]]
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[[Category: Novofumigatonin]]
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[[Category: Oxidoreductase]]
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Current revision

iron and alpha-ketoglutarate-dependent endoperoxidase NvfI with different conformation

PDB ID 7enb

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