This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


7vbq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: '''Unreleased structure''' The entry 7vbq is ON HOLD Authors: Li, X., Awakawa, T., Mori, T., Abe, I. Description: Heterodimer structure of Fe(II)/(alpha)ketoglutarate-dependent dioxyge...)
Current revision (17:22, 29 November 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 7vbq is ON HOLD
+
==Heterodimer structure of Fe(II)/(alpha)ketoglutarate-dependent dioxygenase TlxIJ==
 +
<StructureSection load='7vbq' size='340' side='right'caption='[[7vbq]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[7vbq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Talaromyces_purpureogenus Talaromyces purpureogenus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VBQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VBQ FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=OGA:N-OXALYLGLYCINE'>OGA</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vbq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vbq OCA], [https://pdbe.org/7vbq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vbq RCSB], [https://www.ebi.ac.uk/pdbsum/7vbq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vbq ProSAT]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Talaromyolides (1-6) are a group of unusual 6/6/6/6/6/6 hexacyclic meroterpenoids with (3R)-6-hydroxymellein and 4,5-seco-drimane substructures, isolated from the marine fungus Talaromyces purpureogenus. We have identified the biosynthetic gene cluster tlxA-J by heterologous expression in Aspergillus, in vitro enzyme assays, and CRISPR-Cas9-based gene inactivation. Remarkably, the heterodimer of non-heme iron (NHI) enzymes, TlxJ-TlxI, catalyzes three steps of oxidation including a key reaction, hydroxylation at C-5 and C-9 of 12, the intermediate with 3-ketohydroxydrimane scaffold, to facilitate a retro-aldol reaction, leading to the construction of the 4,5-secodrimane skeleton and characteristic ketal scaffold of 1-6. The products of TlxJ-TlxI, 1 and 4, were further hydroxylated at C-4'beta by another NHI heterodimer, TlxA-TlxC, and acetylated by TlxB to yield the final products, 3 and 6. The X-ray structural analysis coupled with site-directed mutagenesis provided insights into the heterodimer TlxJ-TlxI formation and its catalysis. This is the first report to show that two NHI proteins form a heterodimer for catalysis and utilizes a novel methodology to create functional oxygenase structures in secondary metabolite biosynthesis.
-
Authors: Li, X., Awakawa, T., Mori, T., Abe, I.
+
Heterodimeric Non-heme Iron Enzymes in Fungal Meroterpenoid Biosynthesis.,Li X, Awakawa T, Mori T, Ling M, Hu D, Wu B, Abe I J Am Chem Soc. 2021 Dec 22;143(50):21425-21432. doi: 10.1021/jacs.1c11548. Epub, 2021 Dec 9. PMID:34881885<ref>PMID:34881885</ref>
-
Description: Heterodimer structure of Fe(II)/(alpha)ketoglutarate-dependent dioxygenase TlxIJ
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Mori, T]]
+
<div class="pdbe-citations 7vbq" style="background-color:#fffaf0;"></div>
-
[[Category: Awakawa, T]]
+
== References ==
-
[[Category: Li, X]]
+
<references/>
-
[[Category: Abe, I]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Talaromyces purpureogenus]]
 +
[[Category: Abe I]]
 +
[[Category: Awakawa T]]
 +
[[Category: Li X]]
 +
[[Category: Mori T]]

Current revision

Heterodimer structure of Fe(II)/(alpha)ketoglutarate-dependent dioxygenase TlxIJ

PDB ID 7vbq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools