This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


7vjh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (17:26, 29 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='7vjh' size='340' side='right'caption='[[7vjh]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
<StructureSection load='7vjh' size='340' side='right'caption='[[7vjh]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[7vjh]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VJH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VJH FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[7vjh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanosarcina_mazei_Go1 Methanosarcina mazei Go1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VJH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VJH FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DTT:2,3-DIHYDROXY-1,4-DITHIOBUTANE'>DTT</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[7viw|7viw]], [[7vix|7vix]], [[7viy|7viy]], [[7viz|7viz]], [[7vj0|7vj0]], [[7vj1|7vj1]], [[7vj2|7vj2]], [[7vj3|7vj3]], [[7vj4|7vj4]], [[7vj5|7vj5]], [[7vj9|7vj9]], [[7vja|7vja]], [[7vjb|7vjb]], [[7vjc|7vjc]], [[7vje|7vje]], [[7vjg|7vjg]], [[7vj6|7vj6]], [[7vj7|7vj7]], [[7vj8|7vj8]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DTT:2,3-DIHYDROXY-1,4-DITHIOBUTANE'>DTT</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Deoxyribodipyrimidine_photo-lyase Deoxyribodipyrimidine photo-lyase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.99.3 4.1.99.3] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vjh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vjh OCA], [https://pdbe.org/7vjh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vjh RCSB], [https://www.ebi.ac.uk/pdbsum/7vjh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vjh ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vjh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vjh OCA], [https://pdbe.org/7vjh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vjh RCSB], [https://www.ebi.ac.uk/pdbsum/7vjh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vjh ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8PYK9_METMA Q8PYK9_METMA]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Deoxyribodipyrimidine photo-lyase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Bessho, Y]]
+
[[Category: Methanosarcina mazei Go1]]
-
[[Category: Chang, C W]]
+
[[Category: Bessho Y]]
-
[[Category: Chang, Y K]]
+
[[Category: Chang C-W]]
-
[[Category: Emmerich, H J]]
+
[[Category: Chang Y-K]]
-
[[Category: Essen, L O]]
+
[[Category: Emmerich H-J]]
-
[[Category: Franz-Badur, S]]
+
[[Category: Essen L-O]]
-
[[Category: Gad, W]]
+
[[Category: Franz-Badur S]]
-
[[Category: Hosokawa, Y]]
+
[[Category: Gad W]]
-
[[Category: Huang, K F]]
+
[[Category: Hosokawa Y]]
-
[[Category: Huang, W C]]
+
[[Category: Huang K-F]]
-
[[Category: Iwata, S]]
+
[[Category: Huang W-C]]
-
[[Category: Joti, Y]]
+
[[Category: Iwata S]]
-
[[Category: Kiontke, S]]
+
[[Category: Joti Y]]
-
[[Category: Lee, C C]]
+
[[Category: Kiontke S]]
-
[[Category: Liao, J H]]
+
[[Category: Lee C-C]]
-
[[Category: Luo, F J]]
+
[[Category: Liao J-H]]
-
[[Category: Maestre-Reyna, M]]
+
[[Category: Luo FJ]]
-
[[Category: Nango, E]]
+
[[Category: Maestre-Reyna M]]
-
[[Category: Owada, S]]
+
[[Category: Nango E]]
-
[[Category: Pang, A H]]
+
[[Category: Ngura Putu EPG]]
-
[[Category: Putu, E P.G Ngura]]
+
[[Category: Owada S]]
-
[[Category: Royant, A]]
+
[[Category: Pang AH]]
-
[[Category: Saft, M]]
+
[[Category: Royant A]]
-
[[Category: Sugahara, M]]
+
[[Category: Saft M]]
-
[[Category: Tanaka, R]]
+
[[Category: Sugahara M]]
-
[[Category: Tanaka, T]]
+
[[Category: Tanaka R]]
-
[[Category: Tono, K]]
+
[[Category: Tanaka T]]
-
[[Category: Tsai, M D]]
+
[[Category: Tono K]]
-
[[Category: Wang, P H]]
+
[[Category: Tsai M-D]]
-
[[Category: Weng, J H]]
+
[[Category: Wang P-H]]
-
[[Category: Wu, H Y]]
+
[[Category: Weng J-H]]
-
[[Category: Wu, W J]]
+
[[Category: Wu H-Y]]
-
[[Category: Yamamoto, J]]
+
[[Category: Wu W-J]]
-
[[Category: Yamashita, A]]
+
[[Category: Yamamoto J]]
-
[[Category: Yang, C H]]
+
[[Category: Yamashita A]]
-
[[Category: Electron transport]]
+
[[Category: Yang C-H]]
-
[[Category: Flavoprotein]]
+
-
[[Category: Photolyase]]
+
-
[[Category: Photoreduction]]
+
-
[[Category: Time-resolved serial crystallography]]
+

Current revision

class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (5 us time-point)

PDB ID 7vjh

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools