1oq0

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[[Image:1oq0.gif|left|200px]]
 
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==P6.1 stem loop from the activation domain of hTR==
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The line below this paragraph, containing "STRUCTURE_1oq0", creates the "Structure Box" on the page.
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<StructureSection load='1oq0' size='340' side='right'caption='[[1oq0]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1oq0]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQ0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OQ0 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oq0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oq0 OCA], [https://pdbe.org/1oq0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oq0 RCSB], [https://www.ebi.ac.uk/pdbsum/1oq0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oq0 ProSAT]</span></td></tr>
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{{STRUCTURE_1oq0| PDB=1oq0 | SCENE= }}
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</table>
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<div style="background-color:#fffaf0;">
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'''P6.1 stem loop from the activation domain of hTR'''
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== Publication Abstract from PubMed ==
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==Overview==
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The ribonucleoprotein enzyme telomerase maintains chromosome ends in most eukaryotes and is critical for a cell's genetic stability and its proliferative viability. All telomerases contain a catalytic protein component homologous to viral reverse transcriptases (TERT) and an RNA (TR) that provides the template sequence as well as a scaffold for ribonucleoprotein assembly. Vertebrate telomerase RNAs have three essential domains: the template, activation and stability domains. Here we report the NMR structure of an essential RNA element derived from the human telomerase RNA activation domain. The sequence forms a stem-loop structure stabilized by a GU wobble pair formed by two of the five unpaired residues capping a short double helical region. The remaining three loop residues are in a well-defined conformation and form phosphate-base stacking interactions reminiscent of other RNA loop structures. Mutations of these unpaired nucleotides abolish enzymatic activity. The structure rationalizes a number of biochemical observations, and allows us to propose how the loop may function in the telomerase catalytic cycle. The pre-formed structure of the loop exposes the bases of these three essential nucleotides and positions them to interact with other RNA sequences within TR, with the reverse transcriptase or with the newly synthesized telomeric DNA strand. The functional role of this stem-loop appears to be conserved in even distantly related organisms such as yeast and ciliates.
The ribonucleoprotein enzyme telomerase maintains chromosome ends in most eukaryotes and is critical for a cell's genetic stability and its proliferative viability. All telomerases contain a catalytic protein component homologous to viral reverse transcriptases (TERT) and an RNA (TR) that provides the template sequence as well as a scaffold for ribonucleoprotein assembly. Vertebrate telomerase RNAs have three essential domains: the template, activation and stability domains. Here we report the NMR structure of an essential RNA element derived from the human telomerase RNA activation domain. The sequence forms a stem-loop structure stabilized by a GU wobble pair formed by two of the five unpaired residues capping a short double helical region. The remaining three loop residues are in a well-defined conformation and form phosphate-base stacking interactions reminiscent of other RNA loop structures. Mutations of these unpaired nucleotides abolish enzymatic activity. The structure rationalizes a number of biochemical observations, and allows us to propose how the loop may function in the telomerase catalytic cycle. The pre-formed structure of the loop exposes the bases of these three essential nucleotides and positions them to interact with other RNA sequences within TR, with the reverse transcriptase or with the newly synthesized telomeric DNA strand. The functional role of this stem-loop appears to be conserved in even distantly related organisms such as yeast and ciliates.
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==About this Structure==
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The solution structure of an essential stem-loop of human telomerase RNA.,Leeper T, Leulliot N, Varani G Nucleic Acids Res. 2003 May 15;31(10):2614-21. PMID:12736311<ref>PMID:12736311</ref>
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Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQ0 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The solution structure of an essential stem-loop of human telomerase RNA., Leeper T, Leulliot N, Varani G, Nucleic Acids Res. 2003 May 15;31(10):2614-21. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12736311 12736311]
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</div>
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[[Category: Leeper, T.]]
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<div class="pdbe-citations 1oq0" style="background-color:#fffaf0;"></div>
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[[Category: Leulliot, N.]]
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== References ==
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[[Category: Varani, G.]]
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<references/>
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[[Category: Nmr]]
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__TOC__
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[[Category: Ribonucleoprotein]]
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</StructureSection>
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[[Category: Rna structure]]
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[[Category: Large Structures]]
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[[Category: Telomerase]]
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[[Category: Leeper T]]
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[[Category: Telomere]]
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[[Category: Leulliot N]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 04:08:37 2008''
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[[Category: Varani G]]

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P6.1 stem loop from the activation domain of hTR

PDB ID 1oq0

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