This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
5o4j
From Proteopedia
(Difference between revisions)
m (Protected "5o4j" [edit=sysop:move=sysop]) |
|||
| (One intermediate revision not shown.) | |||
| Line 1: | Line 1: | ||
==HcgC from Methanococcus maripaludis cocrystallized with SAH and pyridinol== | ==HcgC from Methanococcus maripaludis cocrystallized with SAH and pyridinol== | ||
| - | <StructureSection load='5o4j' size='340' side='right' caption='[[5o4j]], [[Resolution|resolution]] 1.70Å' scene=''> | + | <StructureSection load='5o4j' size='340' side='right'caption='[[5o4j]], [[Resolution|resolution]] 1.70Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5o4j]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5O4J OCA]. For a <b>guided tour on the structure components</b> use [ | + | <table><tr><td colspan='2'>[[5o4j]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanococcus_maripaludis_S2 Methanococcus maripaludis S2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5O4J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5O4J FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=9KH:6-carboxy+methyl-4-hydroxy-2-pyridinol'>9KH</scene>, <scene name='pdbligand=LI:LITHIUM+ION'>LI</scene>, <scene name='pdbligand=PE4:2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL'>PE4</scene>, <scene name='pdbligand=PJL:(3~{E})-3-[(~{E})-3-oxidanylprop-2-enoyl]iminopropanoic+acid'>PJL</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=9KH:6-carboxy+methyl-4-hydroxy-2-pyridinol'>9KH</scene>, <scene name='pdbligand=LI:LITHIUM+ION'>LI</scene>, <scene name='pdbligand=PE4:2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL'>PE4</scene>, <scene name='pdbligand=PJL:(3~{E})-3-[(~{E})-3-oxidanylprop-2-enoyl]iminopropanoic+acid'>PJL</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5o4j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5o4j OCA], [https://pdbe.org/5o4j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5o4j RCSB], [https://www.ebi.ac.uk/pdbsum/5o4j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5o4j ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q6LX54_METMP Q6LX54_METMP] | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
| Line 16: | Line 19: | ||
</div> | </div> | ||
<div class="pdbe-citations 5o4j" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 5o4j" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[SAM-dependent methyltrasferase 3D structures|SAM-dependent methyltrasferase 3D structures]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Methanococcus maripaludis S2]] |
| - | [[Category: | + | [[Category: Bai L]] |
| - | [[Category: | + | [[Category: Ermler U]] |
| - | [[Category: | + | [[Category: Hu X]] |
| - | [[Category: | + | [[Category: Shima S]] |
| - | [[Category: | + | [[Category: Wagner T]] |
| - | [[Category: | + | [[Category: Xu T]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
HcgC from Methanococcus maripaludis cocrystallized with SAH and pyridinol
| |||||||||||
Categories: Large Structures | Methanococcus maripaludis S2 | Bai L | Ermler U | Hu X | Shima S | Wagner T | Xu T
