5o9f
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 5o9f is ON HOLD until Paper Publication Authors: Dobritzsch, D., Maurer, D., Hamnevik, E., Enugala, T.R., Widersten, M. Description: Crystal struct...) |
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- | '''Unreleased structure''' | ||
- | + | ==Crystal structure of R. ruber ADH-A, mutant Y294F, W295A, Y54F, F43S, H39Y== | |
+ | <StructureSection load='5o9f' size='340' side='right'caption='[[5o9f]], [[Resolution|resolution]] 1.64Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[5o9f]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_sp._M8 Rhodococcus sp. M8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5O9F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5O9F FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.64Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=9ON:(2~{S})-2-methylpentanedioic+acid'>9ON</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5o9f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5o9f OCA], [https://pdbe.org/5o9f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5o9f RCSB], [https://www.ebi.ac.uk/pdbsum/5o9f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5o9f ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/A0A1Q8I6M1_9NOCA A0A1Q8I6M1_9NOCA] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Alcohol dehydrogenase A (ADH-A) from Rhodococcus ruber DSM 44541 is a promising biocatalyst for redox transformations of arylsubstituted sec-alcohols and ketones. The enzyme is stereoselective in the oxidation of 1-phenylethanol with a 300-fold preference for the (S)-enantiomer. The low catalytic efficiency with (R)-1-phenylethanol has been attributed to nonproductive binding of this substrate at the active site. Aiming to modify the enantioselectivity, to rather favor the (R)-alcohol, and also test the possible involvement of nonproductive substrate binding as a mechanism in substrate discrimination, we performed directed laboratory evolution of ADH-A. Three targeted sites that contribute to the active-site cavity were exposed to saturation mutagenesis in a stepwise manner and the generated variants were selected for improved catalytic activity with (R)-1-phenylethanol. After three subsequent rounds of mutagenesis, selection and structure-function analysis of isolated ADH-A variants, we conclude: (1) W295 has a key role as a structural determinant in the discrimination between (R)- and (S)-1-phenylethanol and a W295A substitution fundamentally changes the stereoselectivity of the protein. One observable effect is a faster rate of NADH release, which changes the rate-limiting step of the catalytic cycle from coenzyme release to hydride transfer. (2) The obtained change in enantiopreference, from the (S)- to the (R)-alcohol, can be partly explained by a shift in the nonproductive substrate binding modes. This article is protected by copyright. All rights reserved. | ||
- | + | Relaxation of nonproductive binding and increased rate of coenzyme release in an alcohol dehydrogenase increases turnover with a non-preferred alcohol enantiomer.,Hamnevik E, Enugala TR, Maurer D, Ntuku S, Oliveira A, Dobritzsch D, Widersten M FEBS J. 2017 Sep 30. doi: 10.1111/febs.14279. PMID:28963762<ref>PMID:28963762</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
- | [[Category: | + | <div class="pdbe-citations 5o9f" style="background-color:#fffaf0;"></div> |
- | [[Category: | + | |
- | [[Category: Enugala | + | ==See Also== |
- | [[Category: Maurer | + | *[[Alcohol dehydrogenase 3D structures|Alcohol dehydrogenase 3D structures]] |
- | [[Category: | + | == References == |
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Rhodococcus sp. M8]] | ||
+ | [[Category: Dobritzsch D]] | ||
+ | [[Category: Enugala TR]] | ||
+ | [[Category: Hamnevik E]] | ||
+ | [[Category: Maurer D]] | ||
+ | [[Category: Widersten M]] |
Current revision
Crystal structure of R. ruber ADH-A, mutant Y294F, W295A, Y54F, F43S, H39Y
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