This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5oc1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "5oc1" [edit=sysop:move=sysop])
Current revision (09:39, 6 December 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5oc1 is ON HOLD until Paper Publication
+
==Crystal structure of aryl-alcohol oxidase from Pleurotus eryngii in complex with p-anisic acid==
 +
<StructureSection load='5oc1' size='340' side='right'caption='[[5oc1]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[5oc1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pleurotus_eryngii Pleurotus eryngii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OC1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5OC1 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ANN:4-METHOXYBENZOIC+ACID'>ANN</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5oc1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5oc1 OCA], [https://pdbe.org/5oc1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5oc1 RCSB], [https://www.ebi.ac.uk/pdbsum/5oc1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5oc1 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/O94219_PLEER O94219_PLEER]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The temperature dependence of hydride transfer from the substrate to the N5 of the FAD cofactor during the reductive half-reaction of Pleurotus eryngii aryl-alcohol oxidase (AAO) is assessed here. Kinetic isotope effects on both the pre-steady state reduction of the enzyme and its steady-state kinetics, with differently deuterated substrates, suggest an environmentally-coupled quantum-mechanical tunnelling process. Moreover, those kinetic data, along with the crystallographic structure of the enzyme in complex with a substrate analogue, indicate that AAO shows a pre-organized active site that would only require the approaching of the hydride donor and acceptor for the tunnelled transfer to take place. Modification of the enzyme's active-site architecture by replacement of Tyr92, a residue establishing hydrophobic interactions with the substrate analogue in the crystal structure, in the Y92F, Y92L and Y92W variants resulted in different temperature dependence patterns that indicated a role of this residue in modulating the transfer reaction.
-
Authors: Carro, J., Martinez-Julvez, M., Medina, M., Martinez, A., Ferreira, P.
+
Protein dynamics promote hydride tunnelling in substrate oxidation by aryl-alcohol oxidase.,Carro J, Martinez-Julvez M, Medina M, Martinez AT, Ferreira P Phys Chem Chem Phys. 2017 Oct 18. doi: 10.1039/c7cp05904c. PMID:29043303<ref>PMID:29043303</ref>
-
Description: Crystal structure of aryl-alcohol oxidase from Pleurotus eryngii in complex with p-anisic acid
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Martinez, A]]
+
<div class="pdbe-citations 5oc1" style="background-color:#fffaf0;"></div>
-
[[Category: Medina, M]]
+
== References ==
-
[[Category: Carro, J]]
+
<references/>
-
[[Category: Martinez-Julvez, M]]
+
__TOC__
-
[[Category: Ferreira, P]]
+
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Pleurotus eryngii]]
 +
[[Category: Carro J]]
 +
[[Category: Ferreira P]]
 +
[[Category: Martinez A]]
 +
[[Category: Martinez-Julvez M]]
 +
[[Category: Medina M]]

Current revision

Crystal structure of aryl-alcohol oxidase from Pleurotus eryngii in complex with p-anisic acid

PDB ID 5oc1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools