1h9m

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:21, 13 December 2023) (edit) (undo)
 
(16 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1h9m.jpg|left|200px]]<br /><applet load="1h9m" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1h9m, resolution 1.65&Aring;" />
 
-
'''TWO CRYSTAL STRUCTURES OF THE CYTOPLASMIC MOLYBDATE-BINDING PROTEIN MODG SUGGEST A NOVEL COOPERATIVE BINDING MECHANISM AND PROVIDE INSIGHTS INTO LIGAND-BINDING SPECIFICITY. PEG-GROWN FORM WITH MOLYBDATE BOUND'''<br />
 
-
==Overview==
+
==Two crystal structures of the cytoplasmic molybdate-binding protein ModG suggest a novel cooperative binding mechanism and provide insights into ligand-binding specificity. PEG-grown form with molybdate bound==
-
The X-ray structures of the cytoplasmic molybdate-binding protein ModG, from Azotobacter vinelandii in two different crystal forms have been, determined. For such a small protein it is remarkably complex. Each 14.3, kDa subunit contains two small beta-barrel domains, which display an, OB-fold motif, also seen in the related structure of ModE, a, molybdenum-dependent transcriptional regulator, and very recently in the, Mop protein that, like ModG, has been implicated in molybdenum homeostasis, within the cell. In contrast to earlier speculation, the functional unit, of ModG is actually not a dimer (as in ModE), but a trimer capable of, binding a total of eight molybdate molecules that are distributed between, two disparate types of site. All the binding sites are located at subunit, interfaces, with one type lying on a crystallographic 3-fold axis, whilst, the other lies between pairs of subunits. The two types of site are linked, by short hydrogen bond networks that may suggest a cooperative binding, mechanism. A superposition of two subunits of the ModG trimer on the, apo-ModE dimer allows the probable locations of the molybdate-binding, sites of the latter to be assigned. Through structural comparisons with, other oxyanion-binding proteins, including Mop and ModE, it is possible to, speculate about ligand-binding affinities, selectivity and evolution., Copyright 12001 Academic Press.
+
<StructureSection load='1h9m' size='340' side='right'caption='[[1h9m]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1h9m]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Azotobacter_vinelandii Azotobacter vinelandii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1H9M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1H9M FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MOO:MOLYBDATE+ION'>MOO</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1h9m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1h9m OCA], [https://pdbe.org/1h9m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1h9m RCSB], [https://www.ebi.ac.uk/pdbsum/1h9m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1h9m ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q44529_AZOVI Q44529_AZOVI]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h9/1h9m_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1h9m ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The X-ray structures of the cytoplasmic molybdate-binding protein ModG from Azotobacter vinelandii in two different crystal forms have been determined. For such a small protein it is remarkably complex. Each 14.3 kDa subunit contains two small beta-barrel domains, which display an OB-fold motif, also seen in the related structure of ModE, a molybdenum-dependent transcriptional regulator, and very recently in the Mop protein that, like ModG, has been implicated in molybdenum homeostasis within the cell. In contrast to earlier speculation, the functional unit of ModG is actually not a dimer (as in ModE), but a trimer capable of binding a total of eight molybdate molecules that are distributed between two disparate types of site. All the binding sites are located at subunit interfaces, with one type lying on a crystallographic 3-fold axis, whilst the other lies between pairs of subunits. The two types of site are linked by short hydrogen bond networks that may suggest a cooperative binding mechanism. A superposition of two subunits of the ModG trimer on the apo-ModE dimer allows the probable locations of the molybdate-binding sites of the latter to be assigned. Through structural comparisons with other oxyanion-binding proteins, including Mop and ModE, it is possible to speculate about ligand-binding affinities, selectivity and evolution. Copyright 12001 Academic Press.
-
==About this Structure==
+
Two crystal structures of the cytoplasmic molybdate-binding protein ModG suggest a novel cooperative binding mechanism and provide insights into ligand-binding specificity.,Delarbre L, Stevenson CE, White DJ, Mitchenall LA, Pau RN, Lawson DM J Mol Biol. 2001 May 18;308(5):1063-79. PMID:11352591<ref>PMID:11352591</ref>
-
1H9M is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Azotobacter_vinelandii Azotobacter vinelandii] with MOO as [http://en.wikipedia.org/wiki/ligand ligand]. Known structural/functional Sites: <scene name='pdbsite=AC1:Moo Binding Site For Chain A1142 Symmetry Related Subuni ...'>AC1</scene>, <scene name='pdbsite=AC2:Moo Binding Site For Chain A1143 Symmetry Related Subuni ...'>AC2</scene>, <scene name='pdbsite=AC3:Moo Binding Site For Chain A1144 Symmetry Related Subuni ...'>AC3</scene>, <scene name='pdbsite=AC4:Moo Binding Site For Chain A1145 Symmetry Related Subuni ...'>AC4</scene>, <scene name='pdbsite=AC5:Moo Binding Site For Chain B1142 Symmetry Related Subuni ...'>AC5</scene>, <scene name='pdbsite=AC6:Moo Binding Site For Chain B1143 Symmetry Related Subuni ...'>AC6</scene>, <scene name='pdbsite=AC7:Moo Binding Site For Chain B1144 Symmetry Related Subuni ...'>AC7</scene> and <scene name='pdbsite=AC8:Moo Binding Site For Chain B1145 Symmetry Related Subuni ...'>AC8</scene>. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1H9M OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
Two crystal structures of the cytoplasmic molybdate-binding protein ModG suggest a novel cooperative binding mechanism and provide insights into ligand-binding specificity., Delarbre L, Stevenson CE, White DJ, Mitchenall LA, Pau RN, Lawson DM, J Mol Biol. 2001 May 18;308(5):1063-79. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11352591 11352591]
+
</div>
-
[[Category: Azotobacter vinelandii]]
+
<div class="pdbe-citations 1h9m" style="background-color:#fffaf0;"></div>
-
[[Category: Single protein]]
+
-
[[Category: Delarbre, L.]]
+
-
[[Category: Lawson, D.M.]]
+
-
[[Category: Mitchenall, L.A.]]
+
-
[[Category: Pau, R.N.]]
+
-
[[Category: Stevenson, C.E.M.]]
+
-
[[Category: White, D.J.]]
+
-
[[Category: MOO]]
+
-
[[Category: binding protein]]
+
-
[[Category: molybdate homeostasis]]
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Dec 18 16:10:14 2007''
+
==See Also==
 +
*[[ModG|ModG]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Azotobacter vinelandii]]
 +
[[Category: Large Structures]]
 +
[[Category: Delarbre L]]
 +
[[Category: Lawson DM]]
 +
[[Category: Mitchenall LA]]
 +
[[Category: Pau RN]]
 +
[[Category: Stevenson CEM]]
 +
[[Category: White DJ]]

Current revision

Two crystal structures of the cytoplasmic molybdate-binding protein ModG suggest a novel cooperative binding mechanism and provide insights into ligand-binding specificity. PEG-grown form with molybdate bound

PDB ID 1h9m

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools