1olp

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[[Image:1olp.gif|left|200px]]<br />
 
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<applet load="1olp" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1olp, resolution 2.50&Aring;" />
 
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'''ALPHA TOXIN FROM CLOSTRIDIUM ABSONUM'''<br />
 
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==Overview==
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==Alpha Toxin from Clostridium Absonum==
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Clostridium absonum phospholipase C (Caa) is a 42.7 kDa protein, which, shows 60% amino acid sequence identity with the Clostridium perfringens, phospholipase C, or alpha-toxin (Cpa), and has been isolated from patients, suffering from gas gangrene. We report the cloning and sequencing, purification, characterisation and crystal structure of the Caa enzyme., Caa had twice the phospholipid-hydrolysing (lecithinase) activity, 1.5, times the haemolytic activity and over seven times the activity towards, phosphatidylcholine-based liposomes when compared with Cpa. However, the, Caa enzyme had a lower activity than Cpa to the free (i.e. not in lipid, bilayer) substrate para-nitrophenylphosphorylcholine, towards, sphingomyelin-based liposomes and showed half the cytotoxicity. The lethal, dose ... [[http://ispc.weizmann.ac.il/pmbin/getpm?14568535 (full description)]]
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<StructureSection load='1olp' size='340' side='right'caption='[[1olp]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1olp]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_sardiniense Clostridium sardiniense]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OLP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OLP FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1olp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1olp OCA], [https://pdbe.org/1olp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1olp RCSB], [https://www.ebi.ac.uk/pdbsum/1olp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1olp ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q8GCY3_CLOSR Q8GCY3_CLOSR]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ol/1olp_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1olp ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Clostridium absonum phospholipase C (Caa) is a 42.7 kDa protein, which shows 60% amino acid sequence identity with the Clostridium perfringens phospholipase C, or alpha-toxin (Cpa), and has been isolated from patients suffering from gas gangrene. We report the cloning and sequencing, purification, characterisation and crystal structure of the Caa enzyme. Caa had twice the phospholipid-hydrolysing (lecithinase) activity, 1.5 times the haemolytic activity and over seven times the activity towards phosphatidylcholine-based liposomes when compared with Cpa. However, the Caa enzyme had a lower activity than Cpa to the free (i.e. not in lipid bilayer) substrate para-nitrophenylphosphorylcholine, towards sphingomyelin-based liposomes and showed half the cytotoxicity. The lethal dose (LD(50)) of Caa in mice was approximately twice that of Cpa. The crystal structure of Caa shows that the 72-93 residue loop is in a conformation different from those of previously determined open-form alpha-toxin structures. This conformational change suggests a role for W84 in membrane binding and a possible route of entry into the active site along a hydrophobic channel created by the re-arrangement of this loop. Overall, the properties of Caa are compatible with a role as a virulence-determinant in gas gangrene caused by C.absonum.
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==About this Structure==
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Clostridium absonum alpha-toxin: new insights into clostridial phospholipase C substrate binding and specificity.,Clark GC, Briggs DC, Karasawa T, Wang X, Cole AR, Maegawa T, Jayasekera PN, Naylor CE, Miller J, Moss DS, Nakamura S, Basak AK, Titball RW J Mol Biol. 2003 Oct 31;333(4):759-69. PMID:14568535<ref>PMID:14568535</ref>
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1OLP is a [[http://en.wikipedia.org/wiki/Single_protein Single protein]] structure of sequence from [[http://en.wikipedia.org/wiki/Clostridium_sardiniense Clostridium sardiniense]] with CA and ZN as [[http://en.wikipedia.org/wiki/ligands ligands]]. Active as [[http://en.wikipedia.org/wiki/Phospholipase_C Phospholipase C]], with EC number [[http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.3 3.1.4.3]]. Structure known Active Site: AC1. Full crystallographic information is available from [[http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1OLP OCA]].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Clostridium absonum alpha-toxin: new insights into clostridial phospholipase C substrate binding and specificity., Clark GC, Briggs DC, Karasawa T, Wang X, Cole AR, Maegawa T, Jayasekera PN, Naylor CE, Miller J, Moss DS, Nakamura S, Basak AK, Titball RW, J Mol Biol. 2003 Oct 31;333(4):759-69. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=14568535 14568535]
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</div>
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[[Category: Clostridium sardiniense]]
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<div class="pdbe-citations 1olp" style="background-color:#fffaf0;"></div>
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[[Category: Phospholipase C]]
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[[Category: Single protein]]
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[[Category: Basak, A.K.]]
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[[Category: Briggs, D.C.]]
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[[Category: CA]]
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[[Category: ZN]]
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[[Category: calcium binding]]
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[[Category: gas gangrene determinant]]
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[[Category: hydrolase]]
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[[Category: membrane binding]]
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[[Category: zinc phospholipase c]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Oct 30 15:57:57 2007''
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==See Also==
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*[[Hemolysin 3D structures|Hemolysin 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Clostridium sardiniense]]
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[[Category: Large Structures]]
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[[Category: Basak AK]]
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[[Category: Briggs DC]]

Current revision

Alpha Toxin from Clostridium Absonum

PDB ID 1olp

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