1up5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:54, 13 December 2023) (edit) (undo)
 
(16 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1up5.gif|left|200px]]<br /><applet load="1up5" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1up5, resolution 1.90&Aring;" />
 
-
'''CHICKEN CALMODULIN'''<br />
 
-
==Overview==
+
==Chicken Calmodulin==
-
Two new crystal forms of calmodulin from Gallus gallus are reported., Crystals in space group P1 (cell dimensions a = 59.7, b = 53.1, c = 24.6, A, alpha = 93.2, beta = 96.7, gamma = 89.2 and Z = 2), grow as long thin, needles. Water content on density considerations is approximately 50%., They diffract to approximately 2.0 A but give wide multiply peaked spot, profiles. Crystals in space group P2(1)2(1)2(1) (cell dimensions a = 32.2, b = 56.0, c = 67.3 A and Z = 4), grow as clusters of thin tablets and, contain approximately 30% water by volume. These small crystals (, approximately 0.4 x 0.15 x 0.1 mm) diffracted well to approximately 1.4 A, and some appreciable intensities were observed at resolutions better than, 1.2 A.
+
<StructureSection load='1up5' size='340' side='right'caption='[[1up5]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1up5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UP5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UP5 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=M3L:N-TRIMETHYLLYSINE'>M3L</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1up5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1up5 OCA], [https://pdbe.org/1up5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1up5 RCSB], [https://www.ebi.ac.uk/pdbsum/1up5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1up5 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CALM_CHICK CALM_CHICK] Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/up/1up5_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1up5 ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Two new crystal forms of calmodulin from Gallus gallus are reported. Crystals in space group P1 (cell dimensions a = 59.7, b = 53.1, c = 24.6 A, alpha = 93.2, beta = 96.7, gamma = 89.2 and Z = 2), grow as long thin needles. Water content on density considerations is approximately 50%. They diffract to approximately 2.0 A but give wide multiply peaked spot profiles. Crystals in space group P2(1)2(1)2(1) (cell dimensions a = 32.2, b = 56.0, c = 67.3 A and Z = 4), grow as clusters of thin tablets and contain approximately 30% water by volume. These small crystals ( approximately 0.4 x 0.15 x 0.1 mm) diffracted well to approximately 1.4 A and some appreciable intensities were observed at resolutions better than 1.2 A.
-
==About this Structure==
+
Crystallization and preliminary X-ray analysis of two new crystal forms of calmodulin.,Rupp B, Marshak DR, Parkin S Acta Crystallogr D Biol Crystallogr. 1996 Mar 1;52(Pt 2):411-3. PMID:15299715<ref>PMID:15299715</ref>
-
1UP5 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus] with <scene name='pdbligand=CA:'>CA</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Known structural/functional Site: <scene name='pdbsite=AC1:Ca+Binding+Site+For+Chain+B'>AC1</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UP5 OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
Crystallization and preliminary X-ray analysis of two new crystal forms of calmodulin., Rupp B, Marshak DR, Parkin S, Acta Crystallogr D Biol Crystallogr. 1996 Mar 1;52(Pt 2):411-3. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15299715 15299715]
+
</div>
-
[[Category: Gallus gallus]]
+
<div class="pdbe-citations 1up5" style="background-color:#fffaf0;"></div>
-
[[Category: Single protein]]
+
-
[[Category: Rupp, B.]]
+
-
[[Category: Wilson, M.A.]]
+
-
[[Category: CA]]
+
-
[[Category: ca signalling]]
+
-
[[Category: calcium-binding]]
+
-
[[Category: phosphorylation]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Feb 3 10:03:32 2008''
+
==See Also==
 +
*[[Calmodulin 3D structures|Calmodulin 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Gallus gallus]]
 +
[[Category: Large Structures]]
 +
[[Category: Rupp B]]
 +
[[Category: Wilson MA]]

Current revision

Chicken Calmodulin

PDB ID 1up5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1up5"
Personal tools