1usq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:56, 13 December 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
==COMPLEX OF E. COLI DRAE ADHESIN WITH CHLORAMPHENICOL==
+
 
-
<StructureSection load='1usq' size='340' side='right' caption='[[1usq]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
==Complex of E. Coli DraE adhesin with Chloramphenicol==
 +
<StructureSection load='1usq' size='340' side='right'caption='[[1usq]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1usq]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1USQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1USQ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1usq]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1USQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1USQ FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CLM:CHLORAMPHENICOL'>CLM</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1ut1|1ut1]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CLM:CHLORAMPHENICOL'>CLM</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1usq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1usq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1usq RCSB], [http://www.ebi.ac.uk/pdbsum/1usq PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1usq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1usq OCA], [https://pdbe.org/1usq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1usq RCSB], [https://www.ebi.ac.uk/pdbsum/1usq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1usq ProSAT]</span></td></tr>
-
<table>
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DRAA_ECOLX DRAA_ECOLX] Hemagglutinins of uropathogenic E.coli mediate adherence to the upper urinary tract. These adhesins bind to the Dr blood group antigen and also agglutinate human erythrocytes in the presence of D-mannose (mannose-resistant hemagglutination (MRHA)).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/us/1usq_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/us/1usq_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1usq ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 25: Line 28:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 1usq" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
-
*[[Hemagglutinin|Hemagglutinin]]
+
*[[Hemagglutinin 3D structures|Hemagglutinin 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 33: Line 37:
</StructureSection>
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Anderson, K L.]]
+
[[Category: Large Structures]]
-
[[Category: Barlow, P.]]
+
[[Category: Anderson KL]]
-
[[Category: Billington, J.]]
+
[[Category: Barlow P]]
-
[[Category: Bouguenec, C Le.]]
+
[[Category: Billington J]]
-
[[Category: Chen, H A.]]
+
[[Category: Chen HA]]
-
[[Category: Cota, E.]]
+
[[Category: Cota E]]
-
[[Category: Dumerle, L.]]
+
[[Category: Dumerle L]]
-
[[Category: Lea, S M.]]
+
[[Category: Le Bouguenec C]]
-
[[Category: Matthews, S.]]
+
[[Category: Lea SM]]
-
[[Category: Medof, E.]]
+
[[Category: Matthews S]]
-
[[Category: Nowicki, B.]]
+
[[Category: Medof E]]
-
[[Category: Pettigrew, D.]]
+
[[Category: Nowicki B]]
-
[[Category: Roversi, P.]]
+
[[Category: Pettigrew D]]
-
[[Category: Simpson, P.]]
+
[[Category: Roversi P]]
-
[[Category: Smith, R A.G.]]
+
[[Category: Simpson P]]
-
[[Category: Urvil, P.]]
+
[[Category: Smith RAG]]
-
[[Category: Adhesin]]
+
[[Category: Urvil P]]
-
[[Category: Chloramphenicol]]
+
-
[[Category: Daec]]
+
-
[[Category: Drae]]
+
-
[[Category: Fimbrial adhesin]]
+
-
[[Category: Upec]]
+

Current revision

Complex of E. Coli DraE adhesin with Chloramphenicol

PDB ID 1usq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools