This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1v03

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:06, 13 December 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
==CRYSTAL STRUCTURE OF THE SORGHUM BICOLOR DHURRINASE 1==
+
 
-
<StructureSection load='1v03' size='340' side='right' caption='[[1v03]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
==Crystal structure of the Sorghum bicolor dhurrinase 1==
 +
<StructureSection load='1v03' size='340' side='right'caption='[[1v03]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1v03]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sorbi Sorbi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V03 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V03 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1v03]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sorghum_bicolor Sorghum bicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V03 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V03 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CCN:ACETONITRILE'>CCN</scene>, <scene name='pdbligand=IPH:PHENOL'>IPH</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1v02|1v02]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CCN:ACETONITRILE'>CCN</scene>, <scene name='pdbligand=IPH:PHENOL'>IPH</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-glucosidase Beta-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.21 3.2.1.21] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v03 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v03 OCA], [https://pdbe.org/1v03 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v03 RCSB], [https://www.ebi.ac.uk/pdbsum/1v03 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v03 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v03 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v03 OCA], [http://pdbe.org/1v03 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1v03 RCSB], [http://www.ebi.ac.uk/pdbsum/1v03 PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q41290_SORBI Q41290_SORBI]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v0/1v03_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v0/1v03_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 31: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Beta-glucosidase]]
+
[[Category: Large Structures]]
-
[[Category: Sorbi]]
+
[[Category: Sorghum bicolor]]
-
[[Category: Bevan, D R]]
+
[[Category: Bevan DR]]
-
[[Category: Czjzek, M]]
+
[[Category: Czjzek M]]
-
[[Category: Esen, A]]
+
[[Category: Esen A]]
-
[[Category: Henrissat, B]]
+
[[Category: Henrissat B]]
-
[[Category: Moriniere, J]]
+
[[Category: Moriniere J]]
-
[[Category: Verdoucq, L]]
+
[[Category: Verdoucq L]]
-
[[Category: Dhurrin hydrolysis]]
+
-
[[Category: Family gh1]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Pest defense]]
+

Current revision

Crystal structure of the Sorghum bicolor dhurrinase 1

PDB ID 1v03

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1v03"
Personal tools