This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2bj3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:39, 13 December 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
==NIKR-APO==
+
==NIKR-apo==
-
<StructureSection load='2bj3' size='340' side='right' caption='[[2bj3]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+
<StructureSection load='2bj3' size='340' side='right'caption='[[2bj3]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2bj3]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BJ3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BJ3 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2bj3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BJ3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BJ3 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2bj1|2bj1]], [[2bj7|2bj7]], [[2bj9|2bj9]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bj3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bj3 OCA], [http://pdbe.org/2bj3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2bj3 RCSB], [http://www.ebi.ac.uk/pdbsum/2bj3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2bj3 ProSAT], [http://www.topsan.org/Proteins/RSGI/2bj3 TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bj3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bj3 OCA], [https://pdbe.org/2bj3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bj3 RCSB], [https://www.ebi.ac.uk/pdbsum/2bj3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bj3 ProSAT], [https://www.topsan.org/Proteins/RSGI/2bj3 TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/NIKR_PYRHO NIKR_PYRHO]] Transcriptional regulator (Potential).
+
[https://www.uniprot.org/uniprot/NIKR_PYRHO NIKR_PYRHO] Transcriptional regulator (Potential).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bj/2bj3_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bj/2bj3_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 33: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Pyrococcus horikoshii]]
+
[[Category: Large Structures]]
-
[[Category: Tahirov, T H]]
+
[[Category: Pyrococcus horikoshii OT3]]
-
[[Category: Nikr]]
+
[[Category: Tahirov TH]]
-
[[Category: Repressor]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Rsgi]]
+
-
[[Category: Transcription]]
+

Current revision

NIKR-apo

PDB ID 2bj3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2bj3"
Personal tools