This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2byt

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:59, 13 December 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Thermus thermophilus Leucyl-tRNA synthetase complexed with a tRNAleu transcript in the post-editing conformation==
==Thermus thermophilus Leucyl-tRNA synthetase complexed with a tRNAleu transcript in the post-editing conformation==
-
<StructureSection load='2byt' size='340' side='right' caption='[[2byt]], [[Resolution|resolution]] 3.30&Aring;' scene=''>
+
<StructureSection load='2byt' size='340' side='right'caption='[[2byt]], [[Resolution|resolution]] 3.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2byt]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BYT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BYT FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2byt]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BYT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BYT FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=LEU:LEUCINE'>LEU</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.3&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1h3n|1h3n]], [[1obc|1obc]], [[1obh|1obh]], [[2bte|2bte]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=LEU:LEUCINE'>LEU</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2byt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2byt OCA], [http://pdbe.org/2byt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2byt RCSB], [http://www.ebi.ac.uk/pdbsum/2byt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2byt ProSAT], [http://www.topsan.org/Proteins/RSGI/2byt TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2byt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2byt OCA], [https://pdbe.org/2byt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2byt RCSB], [https://www.ebi.ac.uk/pdbsum/2byt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2byt ProSAT], [https://www.topsan.org/Proteins/RSGI/2byt TOPSAN]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q7SIE4_THETH Q7SIE4_THETH]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 29: Line 31:
==See Also==
==See Also==
-
*[[Aminoacyl tRNA Synthetase|Aminoacyl tRNA Synthetase]]
+
*[[Aminoacyl tRNA synthetase 3D structures|Aminoacyl tRNA synthetase 3D structures]]
-
*[[TRNA|TRNA]]
+
*[[Transfer RNA (tRNA)|Transfer RNA (tRNA)]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
+
[[Category: Large Structures]]
-
[[Category: Cusack, S]]
+
[[Category: Thermus thermophilus]]
-
[[Category: Fukunaga, R]]
+
[[Category: Cusack S]]
-
[[Category: Tukalo, M]]
+
[[Category: Fukunaga R]]
-
[[Category: Yaremchuk, A]]
+
[[Category: Tukalo M]]
-
[[Category: Yokoyama, S]]
+
[[Category: Yaremchuk A]]
-
[[Category: Aminoacyl-trna synthetase]]
+
[[Category: Yokoyama S]]
-
[[Category: Class i aminoacyl-trna synthetase]]
+
-
[[Category: Editing]]
+
-
[[Category: Synthetase]]
+

Current revision

Thermus thermophilus Leucyl-tRNA synthetase complexed with a tRNAleu transcript in the post-editing conformation

PDB ID 2byt

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools