This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2c1q
From Proteopedia
(Difference between revisions)
| (5 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | ==X- | + | |
| - | <StructureSection load='2c1q' size='340' side='right' caption='[[2c1q]], [[Resolution|resolution]] 2.10Å' scene=''> | + | ==X-ray structure of biotin binding protein from chicken== |
| + | <StructureSection load='2c1q' size='340' side='right'caption='[[2c1q]], [[Resolution|resolution]] 2.10Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2c1q]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2c1q]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2C1Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2C1Q FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BTN:BIOTIN'>BTN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2c1q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2c1q OCA], [https://pdbe.org/2c1q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2c1q RCSB], [https://www.ebi.ac.uk/pdbsum/2c1q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2c1q ProSAT]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
| Line 11: | Line 12: | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c1/2c1q_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c1/2c1q_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2c1q ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
| Line 25: | Line 26: | ||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 2c1q" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
| Line 30: | Line 32: | ||
</StructureSection> | </StructureSection> | ||
[[Category: Gallus gallus]] | [[Category: Gallus gallus]] | ||
| - | [[Category: Airenne | + | [[Category: Large Structures]] |
| - | [[Category: Halling | + | [[Category: Airenne TT]] |
| - | [[Category: Helttunen | + | [[Category: Halling KK]] |
| - | [[Category: Huuskonen | + | [[Category: Helttunen KJ]] |
| - | [[Category: Hytonen | + | [[Category: Huuskonen J]] |
| - | [[Category: Johnson | + | [[Category: Hytonen VP]] |
| - | [[Category: Kulomaa | + | [[Category: Johnson MS]] |
| - | [[Category: Laitinen | + | [[Category: Kulomaa MS]] |
| - | [[Category: Maatta | + | [[Category: Laitinen OH]] |
| - | [[Category: Niskanen | + | [[Category: Maatta JAE]] |
| - | [[Category: Nordlund | + | [[Category: Niskanen EA]] |
| - | [[Category: Rissanen | + | [[Category: Nordlund HR]] |
| - | [[Category: Salminen | + | [[Category: Rissanen K]] |
| - | [[Category: Slotte | + | [[Category: Salminen TA]] |
| - | + | [[Category: Slotte JP]] | |
Current revision
X-ray structure of biotin binding protein from chicken
| |||||||||||
Categories: Gallus gallus | Large Structures | Airenne TT | Halling KK | Helttunen KJ | Huuskonen J | Hytonen VP | Johnson MS | Kulomaa MS | Laitinen OH | Maatta JAE | Niskanen EA | Nordlund HR | Rissanen K | Salminen TA | Slotte JP

