This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2c9h

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:10, 13 December 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2c9h.gif|left|200px]]<br /><applet load="2c9h" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2c9h, resolution 1.80&Aring;" />
 
-
'''STRUCTURE OF MITOCHONDRIAL BETA-KETOACYL SYNTHASE'''<br />
 
-
==About this Structure==
+
==Structure of mitochondrial beta-ketoacyl synthase==
-
2C9H is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=NI:'>NI</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Beta-ketoacyl-acyl-carrier-protein_synthase_I Beta-ketoacyl-acyl-carrier-protein synthase I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.1.41 2.3.1.41] Known structural/functional Site: <scene name='pdbsite=AC1:Ni+Binding+Site+For+Chain+A'>AC1</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2C9H OCA].
+
<StructureSection load='2c9h' size='340' side='right'caption='[[2c9h]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
[[Category: Beta-ketoacyl-acyl-carrier-protein synthase I]]
+
== Structural highlights ==
-
[[Category: Homo sapiens]]
+
<table><tr><td colspan='2'>[[2c9h]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2C9H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2C9H FirstGlance]. <br>
-
[[Category: Single protein]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
[[Category: Arrowsmith, C.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-
[[Category: Bunkoczi, G.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2c9h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2c9h OCA], [https://pdbe.org/2c9h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2c9h RCSB], [https://www.ebi.ac.uk/pdbsum/2c9h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2c9h ProSAT]</span></td></tr>
-
[[Category: Delft, F Von.]]
+
</table>
-
[[Category: Edwards, A.]]
+
== Function ==
-
[[Category: Gileadi, O.]]
+
[https://www.uniprot.org/uniprot/OXSM_HUMAN OXSM_HUMAN] May play a role in the biosynthesis of lipoic acid as well as longer chain fatty acids required for optimal mitochondrial function.<ref>PMID:15668256</ref>
-
[[Category: Oppermann, U.]]
+
== Evolutionary Conservation ==
-
[[Category: Smee, C.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Sundstrom, M.]]
+
Check<jmol>
-
[[Category: Weigelt, J.]]
+
<jmolCheckbox>
-
[[Category: Wu, X.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c9/2c9h_consurf.spt"</scriptWhenChecked>
-
[[Category: NI]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: fatty acid synthesis]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: ketoacyl synthase]]
+
</jmolCheckbox>
-
[[Category: mitochondria]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2c9h ConSurf].
-
[[Category: transferase]]
+
<div style="clear:both"></div>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:46:21 2008''
+
==See Also==
 +
*[[Acyl carrier protein synthase 3D structures|Acyl carrier protein synthase 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Homo sapiens]]
 +
[[Category: Large Structures]]
 +
[[Category: Arrowsmith C]]
 +
[[Category: Bunkoczi G]]
 +
[[Category: Edwards A]]
 +
[[Category: Gileadi O]]
 +
[[Category: Oppermann U]]
 +
[[Category: Smee C]]
 +
[[Category: Sundstrom M]]
 +
[[Category: Weigelt J]]
 +
[[Category: Wu X]]
 +
[[Category: Von Delft F]]

Current revision

Structure of mitochondrial beta-ketoacyl synthase

PDB ID 2c9h

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools