This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2cfk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:16, 13 December 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==AGAO in complex with wc5 (Ru-wire inhibitor, 5-carbon linker)==
==AGAO in complex with wc5 (Ru-wire inhibitor, 5-carbon linker)==
-
<StructureSection load='2cfk' size='340' side='right' caption='[[2cfk]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+
<StructureSection load='2cfk' size='340' side='right'caption='[[2cfk]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2cfk]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_globiformis"_(conn_1928)_bergey_et_al._1930 "achromobacter globiformis" (conn 1928) bergey et al. 1930]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CFK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CFK FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2cfk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arthrobacter_globiformis Arthrobacter globiformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CFK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CFK FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=R5A:RUTHENIUM+WIRE,+5+CARBON+LINKER'>R5A</scene>, <scene name='pdbligand=R5B:RUTHENIUM+WIRE+WC5'>R5B</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=TPQ:5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE'>TPQ</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=R5A:RUTHENIUM+WIRE,+5+CARBON+LINKER'>R5A</scene>, <scene name='pdbligand=R5B:RUTHENIUM+WIRE+WC5'>R5B</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TPQ:5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE'>TPQ</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1av4|1av4]], [[1avk|1avk]], [[1avl|1avl]], [[1iqx|1iqx]], [[1iqy|1iqy]], [[1iu7|1iu7]], [[1ivu|1ivu]], [[1ivv|1ivv]], [[1ivw|1ivw]], [[1ivx|1ivx]], [[1rjo|1rjo]], [[1sih|1sih]], [[1sii|1sii]], [[1ui7|1ui7]], [[1ui8|1ui8]], [[1w4n|1w4n]], [[1w5z|1w5z]], [[1w6c|1w6c]], [[1w6g|1w6g]], [[1wmn|1wmn]], [[1wmo|1wmo]], [[1wmp|1wmp]], [[2bt3|2bt3]], [[2cfd|2cfd]], [[2cfg|2cfg]], [[2cfl|2cfl]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cfk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cfk OCA], [https://pdbe.org/2cfk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cfk RCSB], [https://www.ebi.ac.uk/pdbsum/2cfk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cfk ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Oxidoreductase Oxidoreductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.21 and 1.4.3.22 1.4.3.21 and 1.4.3.22] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cfk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cfk OCA], [http://pdbe.org/2cfk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2cfk RCSB], [http://www.ebi.ac.uk/pdbsum/2cfk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2cfk ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PAOX_ARTGO PAOX_ARTGO]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 31: Line 31:
==See Also==
==See Also==
-
*[[Copper Amine Oxidase|Copper Amine Oxidase]]
+
*[[Copper amine oxidase 3D structures|Copper amine oxidase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Oxidoreductase]]
+
[[Category: Arthrobacter globiformis]]
-
[[Category: Contakes, S M]]
+
[[Category: Large Structures]]
-
[[Category: Dooley, D M]]
+
[[Category: Contakes SM]]
-
[[Category: Duff, A P]]
+
[[Category: Dooley DM]]
-
[[Category: Dunn, A R]]
+
[[Category: Duff AP]]
-
[[Category: Freeman, H C]]
+
[[Category: Dunn AR]]
-
[[Category: Gray, H B]]
+
[[Category: Freeman HC]]
-
[[Category: Guss, J M]]
+
[[Category: Gray HB]]
-
[[Category: Halpern-Manners, N W]]
+
[[Category: Guss JM]]
-
[[Category: Juda, G A]]
+
[[Category: Halpern-Manners NW]]
-
[[Category: Langley, D B]]
+
[[Category: Juda GA]]
-
[[Category: Amine oxidase]]
+
[[Category: Langley DB]]
-
[[Category: Arthrobacter globiformi]]
+
-
[[Category: Competitive inhibition]]
+
-
[[Category: Copper]]
+
-
[[Category: Copper containing]]
+
-
[[Category: Cuao]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Quinone]]
+
-
[[Category: Ruthenium diimine wire]]
+
-
[[Category: Tpq]]
+

Current revision

AGAO in complex with wc5 (Ru-wire inhibitor, 5-carbon linker)

PDB ID 2cfk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools