This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2j13

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:31, 13 December 2023) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2j13.gif|left|200px]]
 
-
{{Structure
+
==Structure of a family 4 carbohydrate esterase from Bacillus anthracis==
-
|PDB= 2j13 |SIZE=350|CAPTION= <scene name='initialview01'>2j13</scene>, resolution 1.70&Aring;
+
<StructureSection load='2j13' size='340' side='right'caption='[[2j13]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
|SITE= <scene name='pdbsite=AC1:Cac+Binding+Site+For+Chain+A'>AC1</scene>
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene> and <scene name='pdbligand=CAC:CACODYLATE ION'>CAC</scene>
+
<table><tr><td colspan='2'>[[2j13]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_anthracis_str._Ames Bacillus anthracis str. Ames]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J13 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2J13 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CAC:CACODYLATE+ION'>CAC</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2j13 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2j13 OCA], [https://pdbe.org/2j13 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2j13 RCSB], [https://www.ebi.ac.uk/pdbsum/2j13 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2j13 ProSAT]</span></td></tr>
-
 
+
</table>
-
'''STRUCTURE OF A FAMILY 4 CARBOHYDRATE ESTERASE FROM BACILLUS ANTHRACIS'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/A0A6H3ACS3_BACAN A0A6H3ACS3_BACAN]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2J13 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_anthracis Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J13 OCA].
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==Reference==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j1/2j13_consurf.spt"</scriptWhenChecked>
-
Structure of a carbohydrate esterase from Bacillus anthracis., Oberbarnscheidt L, Taylor EJ, Davies GJ, Gloster TM, Proteins. 2007 Jan 1;66(1):250-2. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17063474 17063474]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Bacillus anthracis]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: Davies, G J.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2j13 ConSurf].
-
[[Category: Gloster, T M.]]
+
<div style="clear:both"></div>
-
[[Category: Oberbarnscheidt, L.]]
+
__TOC__
-
[[Category: Taylor, E J.]]
+
</StructureSection>
-
[[Category: ACT]]
+
[[Category: Bacillus anthracis str. Ames]]
-
[[Category: CAC]]
+
[[Category: Large Structures]]
-
[[Category: ZN]]
+
[[Category: Davies GJ]]
-
[[Category: bacillus anthracis]]
+
[[Category: Gloster TM]]
-
[[Category: bacterial cell wall]]
+
[[Category: Oberbarnscheidt L]]
-
[[Category: carbohydrate esterase]]
+
[[Category: Taylor EJ]]
-
[[Category: family 4]]
+
-
[[Category: hydrolase]]
+
-
[[Category: peptidoglycan]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 17:36:02 2008''
+

Current revision

Structure of a family 4 carbohydrate esterase from Bacillus anthracis

PDB ID 2j13

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools