This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2j8w

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:38, 13 December 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 3: Line 3:
<StructureSection load='2j8w' size='340' side='right'caption='[[2j8w]], [[Resolution|resolution]] 1.29&Aring;' scene=''>
<StructureSection load='2j8w' size='340' side='right'caption='[[2j8w]], [[Resolution|resolution]] 1.29&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2j8w]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Rubrivivax_gelatinosus Rubrivivax gelatinosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J8W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2J8W FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2j8w]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rubrivivax_gelatinosus Rubrivivax gelatinosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J8W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2J8W FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.29&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1jaf|1jaf]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2j8w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2j8w OCA], [http://pdbe.org/2j8w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2j8w RCSB], [http://www.ebi.ac.uk/pdbsum/2j8w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2j8w ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2j8w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2j8w OCA], [https://pdbe.org/2j8w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2j8w RCSB], [https://www.ebi.ac.uk/pdbsum/2j8w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2j8w ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/CYCP_RUBGE CYCP_RUBGE]] Cytochrome c' is the most widely occurring bacterial c-type cytochrome. Cytochromes c' are high-spin proteins and the heme has no sixth ligand. Their exact function is not known.
+
[https://www.uniprot.org/uniprot/CYCP_RUBGE CYCP_RUBGE] Cytochrome c' is the most widely occurring bacterial c-type cytochrome. Cytochromes c' are high-spin proteins and the heme has no sixth ligand. Their exact function is not known.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 31: Line 31:
==See Also==
==See Also==
 +
*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
*[[Cytochrome c|Cytochrome c]]
*[[Cytochrome c|Cytochrome c]]
-
*[[Journal:JBIC:31|Journal:JBIC:31]]
+
*[[Hemeproteins|Hemeproteins]]
== References ==
== References ==
<references/>
<references/>
Line 39: Line 40:
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Rubrivivax gelatinosus]]
[[Category: Rubrivivax gelatinosus]]
-
[[Category: Benini, S]]
+
[[Category: Benini S]]
-
[[Category: Ciurli, S]]
+
[[Category: Ciurli S]]
-
[[Category: Rypniewski, W R]]
+
[[Category: Rypniewski WR]]
-
[[Category: Wilson, K S]]
+
[[Category: Wilson KS]]
-
[[Category: Css']]
+
-
[[Category: Cytochrome]]
+
-
[[Category: Electron transfer]]
+
-
[[Category: Electron transport]]
+
-
[[Category: Heme]]
+
-
[[Category: Iron]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Transport]]
+

Current revision

The crystal structure of cytochrome c' from Rubrivivax gelatinosus at 1.3 A Resolution and pH 8.0

PDB ID 2j8w

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools