This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2j96

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:39, 13 December 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
 +
==The E-configuration of alfa-Phycoerythrocyanin==
==The E-configuration of alfa-Phycoerythrocyanin==
-
<StructureSection load='2j96' size='340' side='right' caption='[[2j96]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
+
<StructureSection load='2j96' size='340' side='right'caption='[[2j96]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2j96]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mastigocladus_laminosus Mastigocladus laminosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J96 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2J96 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2j96]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mastigocladus_laminosus Mastigocladus laminosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J96 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2J96 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PVN:PHYCOVIOLOBILIN'>PVN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2c7j|2c7j]], [[2c7k|2c7k]], [[2c7l|2c7l]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PVN:PHYCOVIOLOBILIN'>PVN</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2j96 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2j96 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2j96 RCSB], [http://www.ebi.ac.uk/pdbsum/2j96 PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2j96 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2j96 OCA], [https://pdbe.org/2j96 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2j96 RCSB], [https://www.ebi.ac.uk/pdbsum/2j96 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2j96 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/PHEA_MASLA PHEA_MASLA]] Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex.
+
[https://www.uniprot.org/uniprot/PHEA_MASLA PHEA_MASLA] Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j9/2j96_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j9/2j96_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2j96 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 27: Line 28:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 2j96" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Mastigocladus laminosus]]
[[Category: Mastigocladus laminosus]]
-
[[Category: Patel, A]]
+
[[Category: Patel A]]
-
[[Category: Reuter, W]]
+
[[Category: Reuter W]]
-
[[Category: Schmidt, M]]
+
[[Category: Schmidt M]]
-
[[Category: Zhao, Y]]
+
[[Category: Zhao Y]]
-
[[Category: Bile pigment]]
+
-
[[Category: Chromophore]]
+
-
[[Category: Electron transport]]
+
-
[[Category: Light harvesting]]
+
-
[[Category: Photosynthesis]]
+
-
[[Category: Phycobiliprotein]]
+
-
[[Category: Phycobilisome]]
+
-
[[Category: Transport]]
+
-
[[Category: Z- to e-isomerization]]
+

Current revision

The E-configuration of alfa-Phycoerythrocyanin

PDB ID 2j96

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools