This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2jga
From Proteopedia
| (2 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
==Crystal structure of human cytosolic 5'-nucleotidase III in complex with phosphate and magnesium== | ==Crystal structure of human cytosolic 5'-nucleotidase III in complex with phosphate and magnesium== | ||
| - | <StructureSection load='2jga' size='340' side='right' caption='[[2jga]], [[Resolution|resolution]] 3.01Å' scene=''> | + | <StructureSection load='2jga' size='340' side='right'caption='[[2jga]], [[Resolution|resolution]] 3.01Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2jga]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2jga]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JGA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JGA FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.01Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jga FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jga OCA], [https://pdbe.org/2jga PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jga RCSB], [https://www.ebi.ac.uk/pdbsum/2jga PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jga ProSAT]</span></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
| + | == Disease == | ||
| + | [https://www.uniprot.org/uniprot/5NT3A_HUMAN 5NT3A_HUMAN] Hemolytic anemia due to pyrimidine 5' nucleotidase deficiency. The disease is caused by variants affecting the gene represented in this entry. | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/5NT3A_HUMAN 5NT3A_HUMAN] Nucleotidase which shows specific activity towards cytidine monophosphate (CMP) and 7-methylguanosine monophosphate (m(7)GMP) (PubMed:24603684). CMP seems to be the preferred substrate (PubMed:15968458).<ref>PMID:15968458</ref> <ref>PMID:24603684</ref> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
| Line 32: | Line 35: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Homo sapiens]] |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Arrowsmith | + | [[Category: Arrowsmith C]] |
| - | + | [[Category: Berglund H]] | |
| - | [[Category: Berglund | + | [[Category: Collins R]] |
| - | [[Category: Collins | + | [[Category: Edwards A]] |
| - | [[Category: Edwards | + | [[Category: Ehn M]] |
| - | [[Category: Ehn | + | [[Category: Flodin S]] |
| - | [[Category: Flodin | + | [[Category: Flores A]] |
| - | [[Category: Flores | + | [[Category: Graslund S]] |
| - | [[Category: Graslund | + | [[Category: Hallberg M]] |
| - | [[Category: Hallberg | + | [[Category: Hammarstrom M]] |
| - | [[Category: Hammarstrom | + | [[Category: Hogbom M]] |
| - | [[Category: Hogbom | + | [[Category: Holmberg B]] |
| - | [[Category: Holmberg | + | [[Category: Kotenyova T]] |
| - | [[Category: Kotenyova | + | [[Category: Magnusdottir A]] |
| - | [[Category: Magnusdottir | + | [[Category: Nilsson-Ehle P]] |
| - | [[Category: Nilsson-Ehle | + | [[Category: Nordlund P]] |
| - | [[Category: Nordlund | + | [[Category: Nyman T]] |
| - | [[Category: Nyman | + | [[Category: Ogg D]] |
| - | [[Category: Ogg | + | [[Category: Persson C]] |
| - | [[Category: Persson | + | [[Category: Sagemark J]] |
| - | [[Category: Sagemark | + | [[Category: Schiavone L]] |
| - | [[Category: Schiavone | + | [[Category: Stenmark P]] |
| - | [[Category: Stenmark | + | [[Category: Sundstrom M]] |
| - | [[Category: Sundstrom | + | [[Category: Thorsell AG]] |
| - | [[Category: Thorsell | + | [[Category: Uppenberg J]] |
| - | [[Category: Uppenberg | + | [[Category: Van Den Berg S]] |
| - | [[Category: | + | [[Category: Wallden K]] |
| - | [[Category: | + | [[Category: Weigelt J]] |
| - | [[Category: | + | [[Category: Welin M]] |
| - | [[Category: | + | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of human cytosolic 5'-nucleotidase III in complex with phosphate and magnesium
| |||||||||||
Categories: Homo sapiens | Large Structures | Arrowsmith C | Berglund H | Collins R | Edwards A | Ehn M | Flodin S | Flores A | Graslund S | Hallberg M | Hammarstrom M | Hogbom M | Holmberg B | Kotenyova T | Magnusdottir A | Nilsson-Ehle P | Nordlund P | Nyman T | Ogg D | Persson C | Sagemark J | Schiavone L | Stenmark P | Sundstrom M | Thorsell AG | Uppenberg J | Van Den Berg S | Wallden K | Weigelt J | Welin M

