This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2jhr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:48, 13 December 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
==CRYSTAL STRUCTURE OF MYOSIN-2 MOTOR DOMAIN IN COMPLEX WITH ADP-METAVANADATE AND PENTABROMOPSEUDILIN==
+
 
-
<StructureSection load='2jhr' size='340' side='right' caption='[[2jhr]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
+
==Crystal structure of myosin-2 motor domain in complex with ADP- metavanadate and pentabromopseudilin==
 +
<StructureSection load='2jhr' size='340' side='right'caption='[[2jhr]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2jhr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dictyostelium_discoideum Dictyostelium discoideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JHR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JHR FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2jhr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Dictyostelium_discoideum Dictyostelium discoideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JHR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JHR FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AD9:ADP+METAVANADATE'>AD9</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PBQ:PENTABROMOPSEUDILIN'>PBQ</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1mne|1mne]], [[1d1c|1d1c]], [[1jx2|1jx2]], [[1q5g|1q5g]], [[1w9l|1w9l]], [[1vom|1vom]], [[1d0y|1d0y]], [[1mmn|1mmn]], [[2aka|2aka]], [[1lvk|1lvk]], [[1w9j|1w9j]], [[1jwy|1jwy]], [[1yv3|1yv3]], [[1fmv|1fmv]], [[1fmw|1fmw]], [[1d0x|1d0x]], [[1d1b|1d1b]], [[1g8x|1g8x]], [[1mma|1mma]], [[1d1a|1d1a]], [[1mmg|1mmg]], [[1w9i|1w9i]], [[1d0z|1d0z]], [[1mnd|1mnd]], [[1w9k|1w9k]], [[1mmd|1mmd]], [[2jj9|2jj9]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AD9:ADP+METAVANADATE'>AD9</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PBQ:PENTABROMOPSEUDILIN'>PBQ</scene></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jhr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jhr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jhr RCSB], [http://www.ebi.ac.uk/pdbsum/2jhr PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jhr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jhr OCA], [https://pdbe.org/2jhr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jhr RCSB], [https://www.ebi.ac.uk/pdbsum/2jhr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jhr ProSAT]</span></td></tr>
-
<table>
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/MYS2_DICDI MYS2_DICDI] Myosin is a protein that binds to actin and has ATPase activity that is activated by actin.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jh/2jhr_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jh/2jhr_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jhr ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 25: Line 28:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 2jhr" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
-
*[[Myosin|Myosin]]
+
*[[Myosin 3D Structures|Myosin 3D Structures]]
== References ==
== References ==
<references/>
<references/>
Line 33: Line 37:
</StructureSection>
</StructureSection>
[[Category: Dictyostelium discoideum]]
[[Category: Dictyostelium discoideum]]
-
[[Category: Baruch, P.]]
+
[[Category: Large Structures]]
-
[[Category: Boehl, M.]]
+
[[Category: Baruch P]]
-
[[Category: Brenner, B.]]
+
[[Category: Boehl M]]
-
[[Category: Fedorov, R.]]
+
[[Category: Brenner B]]
-
[[Category: Gutzeit, H O.]]
+
[[Category: Fedorov R]]
-
[[Category: Hartmann, F K.]]
+
[[Category: Gutzeit HO]]
-
[[Category: Knoelker, H J.]]
+
[[Category: Hartmann FK]]
-
[[Category: Manstein, D J.]]
+
[[Category: Knoelker HJ]]
-
[[Category: Martin, R.]]
+
[[Category: Manstein DJ]]
-
[[Category: Tsiavaliaris, G.]]
+
[[Category: Martin R]]
-
[[Category: Actin-binding]]
+
[[Category: Tsiavaliaris G]]
-
[[Category: Allosteric]]
+
-
[[Category: Atp-binding]]
+
-
[[Category: Calmodulin-binding]]
+
-
[[Category: Contractile protein]]
+
-
[[Category: Methylation]]
+
-
[[Category: Motor protein]]
+
-
[[Category: Nucleotide-binding]]
+
-
[[Category: Phosphoprotein]]
+

Current revision

Crystal structure of myosin-2 motor domain in complex with ADP- metavanadate and pentabromopseudilin

PDB ID 2jhr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools