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| | ==Holo structure of Maleyl Pyruvate Isomerase, a bacterial glutathione- s-transferase in Zeta class== | | ==Holo structure of Maleyl Pyruvate Isomerase, a bacterial glutathione- s-transferase in Zeta class== |
| - | <StructureSection load='2jl4' size='340' side='right' caption='[[2jl4]], [[Resolution|resolution]] 2.30Å' scene=''> | + | <StructureSection load='2jl4' size='340' side='right'caption='[[2jl4]], [[Resolution|resolution]] 2.30Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[2jl4]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp._u2 Pseudomonas sp. u2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JL4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JL4 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2jl4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ralstonia_sp._U2 Ralstonia sp. U2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JL4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JL4 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2v6k|2v6k]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Maleylacetoacetate_isomerase Maleylacetoacetate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.2.1.2 5.2.1.2] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jl4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jl4 OCA], [https://pdbe.org/2jl4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jl4 RCSB], [https://www.ebi.ac.uk/pdbsum/2jl4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jl4 ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jl4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jl4 OCA], [http://pdbe.org/2jl4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jl4 RCSB], [http://www.ebi.ac.uk/pdbsum/2jl4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2jl4 ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/NAGL_RALSP NAGL_RALSP] Catalyzes the GSH-dependent isomerization of maleylpyruvate to fumarylpyruvate which is subsequently processed by NagK to form pyruvate and fumarate.<ref>PMID:11133965</ref> |
| | == Evolutionary Conservation == | | == Evolutionary Conservation == |
| | [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| | </div> | | </div> |
| | <div class="pdbe-citations 2jl4" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 2jl4" style="background-color:#fffaf0;"></div> |
| | + | |
| | + | ==See Also== |
| | + | *[[Glutathione S-transferase 3D structures|Glutathione S-transferase 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Maleylacetoacetate isomerase]] | + | [[Category: Large Structures]] |
| - | [[Category: Pseudomonas sp. u2]] | + | [[Category: Ralstonia sp. U2]] |
| - | [[Category: Hadfield, A T]] | + | [[Category: Hadfield AT]] |
| - | [[Category: Shoemark, D K]] | + | [[Category: Shoemark DK]] |
| - | [[Category: Williams, P A]] | + | [[Category: Williams PA]] |
| - | [[Category: Zhou, N Y]] | + | [[Category: Y Zhou N]] |
| - | [[Category: Bacterial]]
| + | |
| - | [[Category: Biodegradation]]
| + | |
| - | [[Category: Fumaryl pyruvate]]
| + | |
| - | [[Category: Glutathione-s-transferase]]
| + | |
| - | [[Category: Gst]]
| + | |
| - | [[Category: Isomerase]]
| + | |
| - | [[Category: Maleyl pyruvate]]
| + | |
| - | [[Category: Plasmid]]
| + | |
| - | [[Category: Pyruvate]]
| + | |
| Structural highlights
Function
NAGL_RALSP Catalyzes the GSH-dependent isomerization of maleylpyruvate to fumarylpyruvate which is subsequently processed by NagK to form pyruvate and fumarate.[1]
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
Maleyl pyruvate isomerase (MPI) is a bacterial glutathione S-transferase (GST) from the pathway for degradation of naphthalene via gentisate that enables the bacterium Ralstonia to use polyaromatic hydrocarbons as a sole carbon source. Genome sequencing projects have revealed the presence of large numbers of GSTs in bacterial genomes, often located within gene clusters encoding the degradation of different aromatic compounds. This structure is therefore an example of this under-represented class of enzymes. Unlike many glutathione transferases, the reaction catalysed by MPI is an isomerisation of an aromatic ring breakdown product, and glutathione is a true cofactor rather than a substrate in the reaction. We have solved the structure of the enzyme in complex with dicarboxyethyl glutathione, an analogue of a proposed reaction intermediate, at a resolution of 1.3 A. The structure provides direct evidence that the glutathione thiolate attacks the substrate in the C2 position, with the terminal carboxylate buried at the base of the active site cleft. Our structures suggest that the C1-C2 bond remains fixed so when rotation occurs around the C2-C3 bond the atoms from C4 onwards actually move. We identified a conserved arginine that is likely to stabilize the enolate form of the substrate during the isomerisation. Arginines at either side of the active site cleft can interact with the end of the substrate/product and preferentially stabilise the product. MPI has significant sequence similarity to maleylacetoacetate isomerase (MAAI), which performs an analogous reaction in the catabolism of phenylalanine and tyrosine. The proposed mechanism therefore has relevance to the MAAIs. Significantly, whilst the overall sequence identity is 40% only one of the five residues from the Zeta motif in the active site is conserved. We re-examined the roles of the residues in the active site of both enzymes and the Zeta motif itself.
Structure of bacterial glutathione-S-transferase maleyl pyruvate isomerase and implications for mechanism of isomerisation.,Marsh M, Shoemark DK, Jacob A, Robinson C, Cahill B, Zhou NY, Williams PA, Hadfield AT J Mol Biol. 2008 Dec 5;384(1):165-77. Epub 2008 Sep 19. PMID:18824004[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Zhou NY, Fuenmayor SL, Williams PA. nag genes of Ralstonia (formerly Pseudomonas) sp. strain U2 encoding enzymes for gentisate catabolism. J Bacteriol. 2001 Jan;183(2):700-8. PMID:11133965 doi:10.1128/JB.183.2.700-708.2001
- ↑ Marsh M, Shoemark DK, Jacob A, Robinson C, Cahill B, Zhou NY, Williams PA, Hadfield AT. Structure of bacterial glutathione-S-transferase maleyl pyruvate isomerase and implications for mechanism of isomerisation. J Mol Biol. 2008 Dec 5;384(1):165-77. Epub 2008 Sep 19. PMID:18824004 doi:http://dx.doi.org/10.1016/j.jmb.2008.09.028
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