This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2vkf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:22, 13 December 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='2vkf' size='340' side='right'caption='[[2vkf]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
<StructureSection load='2vkf' size='340' side='right'caption='[[2vkf]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2vkf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Hals3 Hals3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VKF OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2VKF FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2vkf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halobacterium_salinarum_R1 Halobacterium salinarum R1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VKF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VKF FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CF2:2-DEOXY-5-O-{[2-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDROBENZO[G]PTERIDIN-10(2H)-YL)ETHYL]CARBAMOYL}GUANOSINE'>CF2</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2ccb|2ccb]], [[2ccc|2ccc]], [[2cif|2cif]], [[1mog|1mog]], [[2cc6|2cc6]], [[2cc7|2cc7]], [[2cc8|2cc8]], [[2cc9|2cc9]], [[2cie|2cie]], [[2cjc|2cjc]], [[2vkg|2vkg]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CF2:2-DEOXY-5-O-{[2-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDROBENZO[G]PTERIDIN-10(2H)-YL)ETHYL]CARBAMOYL}GUANOSINE'>CF2</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2vkf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vkf OCA], [http://pdbe.org/2vkf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vkf RCSB], [http://www.ebi.ac.uk/pdbsum/2vkf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vkf ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vkf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vkf OCA], [https://pdbe.org/2vkf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vkf RCSB], [https://www.ebi.ac.uk/pdbsum/2vkf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vkf ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9HPW4_HALSA Q9HPW4_HALSA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 31: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Hals3]]
+
[[Category: Halobacterium salinarum R1]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Grininger, M]]
+
[[Category: Grininger M]]
-
[[Category: Noell, G]]
+
[[Category: Noell G]]
-
[[Category: Oesterhelt, D]]
+
[[Category: Oesterhelt D]]
-
[[Category: Sinner, E]]
+
[[Category: Sinner E]]
-
[[Category: Trawoeger, S]]
+
[[Category: Trawoeger S]]
-
[[Category: Biotechnological application of dodecin binding property]]
+
-
[[Category: Electron transport]]
+
-
[[Category: Flavin-dna ligand hybrid]]
+

Current revision

COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN-LIKE LIGANDS

PDB ID 2vkf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools