This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2vq0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:28, 13 December 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Capsid structure of Sesbania mosaic virus coat protein deletion mutant rCP(delta 48 to 59)==
==Capsid structure of Sesbania mosaic virus coat protein deletion mutant rCP(delta 48 to 59)==
-
<StructureSection load='2vq0' size='340' side='right' caption='[[2vq0]], [[Resolution|resolution]] 3.60&Aring;' scene=''>
+
<StructureSection load='2vq0' size='340' side='right'caption='[[2vq0]], [[Resolution|resolution]] 3.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2vq0]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Sesbania_mosaic_virus Sesbania mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VQ0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VQ0 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2vq0]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Sesbania_mosaic_virus Sesbania mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VQ0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VQ0 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.6&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1x36|1x36]], [[1x33|1x33]], [[1x35|1x35]], [[1smv|1smv]], [[1vak|1vak]], [[1vb4|1vb4]], [[1vb2|1vb2]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vq0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vq0 OCA], [http://pdbe.org/2vq0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vq0 RCSB], [http://www.ebi.ac.uk/pdbsum/2vq0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vq0 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vq0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vq0 OCA], [https://pdbe.org/2vq0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vq0 RCSB], [https://www.ebi.ac.uk/pdbsum/2vq0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vq0 ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9EB06_9VIRU Q9EB06_9VIRU]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vq/2vq0_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vq/2vq0_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 27: Line 29:
</div>
</div>
<div class="pdbe-citations 2vq0" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 2vq0" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Sesbania mosaic virus]]
[[Category: Sesbania mosaic virus]]
-
[[Category: Anju, P]]
+
[[Category: Anju P]]
-
[[Category: Murthy, M R.N]]
+
[[Category: Murthy MRN]]
-
[[Category: Satheshkumar, P S]]
+
[[Category: Satheshkumar PS]]
-
[[Category: Savithri, H S]]
+
[[Category: Savithri HS]]
-
[[Category: Subashchandrabose, C]]
+
[[Category: Subashchandrabose C]]
-
[[Category: Beta-annulus]]
+
-
[[Category: Capsid protein]]
+
-
[[Category: Coat protein]]
+
-
[[Category: Viral protein]]
+
-
[[Category: Virion]]
+
-
[[Category: Virus assembly]]
+

Current revision

Capsid structure of Sesbania mosaic virus coat protein deletion mutant rCP(delta 48 to 59)

PDB ID 2vq0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2vq0"
Personal tools