This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2vqt

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:28, 13 December 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='2vqt' size='340' side='right'caption='[[2vqt]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
<StructureSection load='2vqt' size='340' side='right'caption='[[2vqt]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2vqt]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_thetaiotaomicron"_distaso_1912 "bacillus thetaiotaomicron" distaso 1912]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VQT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VQT FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2vqt]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VQT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VQT FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=15A:(2Z,3R,4S,5R,6R)-2-[(2-AMINOETHYL)IMINO]-6-(HYDROXYMETHYL)PIPERIDINE-3,4,5-TRIOL'>15A</scene>, <scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2vot|2vot]], [[2vl4|2vl4]], [[2vqu|2vqu]], [[2vo5|2vo5]], [[2je8|2je8]], [[2vr4|2vr4]], [[2vjx|2vjx]], [[2vmf|2vmf]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=15A:(2Z,3R,4S,5R,6R)-2-[(2-AMINOETHYL)IMINO]-6-(HYDROXYMETHYL)PIPERIDINE-3,4,5-TRIOL'>15A</scene>, <scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Beta-mannosidase Beta-mannosidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.25 3.2.1.25] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vqt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vqt OCA], [https://pdbe.org/2vqt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vqt RCSB], [https://www.ebi.ac.uk/pdbsum/2vqt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vqt ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vqt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vqt OCA], [https://pdbe.org/2vqt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vqt RCSB], [https://www.ebi.ac.uk/pdbsum/2vqt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vqt ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8AAK6_BACTN Q8AAK6_BACTN]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 35: Line 36:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus thetaiotaomicron distaso 1912]]
+
[[Category: Bacteroides thetaiotaomicron]]
-
[[Category: Beta-mannosidase]]
+
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Bleriot, Y]]
+
[[Category: Bleriot Y]]
-
[[Category: Davies, G J]]
+
[[Category: Davies GJ]]
-
[[Category: Dumon, C]]
+
[[Category: Dumon C]]
-
[[Category: Gilbert, H J]]
+
[[Category: Gilbert HJ]]
-
[[Category: Gratien, J]]
+
[[Category: Gratien J]]
-
[[Category: Heck, M P]]
+
[[Category: Heck MP]]
-
[[Category: Moreland, C]]
+
[[Category: Moreland C]]
-
[[Category: Offen, W A]]
+
[[Category: Offen WA]]
-
[[Category: Smith, N L]]
+
[[Category: Smith NL]]
-
[[Category: Stick, R V]]
+
[[Category: Stick RV]]
-
[[Category: Tailford, L E]]
+
[[Category: Tailford LE]]
-
[[Category: Vasella, A]]
+
[[Category: Vasella A]]
-
[[Category: Glycoside hydrolase]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Linear free energy relationship]]
+
-
[[Category: Mannosidase]]
+
-
[[Category: Transition state mimic]]
+

Current revision

Structural and biochemical evidence for a boat-like transition state in beta-mannosidases

PDB ID 2vqt

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2vqt"
Personal tools