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2vuz

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==CRYSTAL STRUCTURE OF CODAKINE IN COMPLEX WITH BIANTENNARY NONASACCHARIDE AT 1.7A RESOLUTION==
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<StructureSection load='2vuz' size='340' side='right' caption='[[2vuz]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
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==Crystal structure of Codakine in complex with biantennary nonasaccharide at 1.7A resolution==
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<StructureSection load='2vuz' size='340' side='right'caption='[[2vuz]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2vuz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Codakia_orbicularis Codakia orbicularis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VUZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VUZ FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2vuz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Codakia_orbicularis Codakia orbicularis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VUZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VUZ FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2vuv|2vuv]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vuz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vuz OCA], [https://pdbe.org/2vuz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vuz RCSB], [https://www.ebi.ac.uk/pdbsum/2vuz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vuz ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vuz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vuz OCA], [http://pdbe.org/2vuz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vuz RCSB], [http://www.ebi.ac.uk/pdbsum/2vuz PDBsum]</span></td></tr>
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</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q3KVL7_9BIVA Q3KVL7_9BIVA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vu/2vuz_consurf.spt"</scriptWhenChecked>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vu/2vuz_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
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</StructureSection>
</StructureSection>
[[Category: Codakia orbicularis]]
[[Category: Codakia orbicularis]]
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[[Category: Cioci, G C]]
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[[Category: Large Structures]]
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[[Category: Gauthier, C]]
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[[Category: Cioci GC]]
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[[Category: Gourdine, J P]]
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[[Category: Gauthier C]]
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[[Category: Imberty, A]]
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[[Category: Gourdine JP]]
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[[Category: Miguet, L]]
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[[Category: Imberty A]]
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[[Category: Smith-Ravin, E J]]
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[[Category: Miguet L]]
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[[Category: Unverzagt, C]]
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[[Category: Smith-Ravin EJ]]
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[[Category: Varrot, A]]
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[[Category: Unverzagt C]]
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[[Category: Biantennary]]
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[[Category: Varrot A]]
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[[Category: C-type]]
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[[Category: Codakia orbiculari]]
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[[Category: Codakine]]
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[[Category: Invertebrate]]
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[[Category: Lectin]]
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[[Category: Nonasaccharide]]
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[[Category: Sugar-binding protein]]
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Current revision

Crystal structure of Codakine in complex with biantennary nonasaccharide at 1.7A resolution

PDB ID 2vuz

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