This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2w2i

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:41, 13 December 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of the human 2-oxoglutarate oxygenase LOC390245==
==Crystal structure of the human 2-oxoglutarate oxygenase LOC390245==
-
<StructureSection load='2w2i' size='340' side='right' caption='[[2w2i]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+
<StructureSection load='2w2i' size='340' side='right'caption='[[2w2i]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2w2i]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W2I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2W2I FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2w2i]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W2I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2W2I FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=PD2:PYRIDINE-2,4-DICARBOXYLIC+ACID'>PD2</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2w2i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w2i OCA], [http://pdbe.org/2w2i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2w2i RCSB], [http://www.ebi.ac.uk/pdbsum/2w2i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2w2i ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=PD2:PYRIDINE-2,4-DICARBOXYLIC+ACID'>PD2</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2w2i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w2i OCA], [https://pdbe.org/2w2i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2w2i RCSB], [https://www.ebi.ac.uk/pdbsum/2w2i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2w2i ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/KDM4E_HUMAN KDM4E_HUMAN]] Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code.<ref>PMID:21914792</ref>
+
[https://www.uniprot.org/uniprot/KDM4E_HUMAN KDM4E_HUMAN] Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code.<ref>PMID:21914792</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 32: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Human]]
+
[[Category: Homo sapiens]]
-
[[Category: Arrowsmith, C]]
+
[[Category: Large Structures]]
-
[[Category: Bountra, C]]
+
[[Category: Arrowsmith C]]
-
[[Category: Delft, F von]]
+
[[Category: Bountra C]]
-
[[Category: Edwards, A]]
+
[[Category: Edwards A]]
-
[[Category: Filippakopoulos, P]]
+
[[Category: Filippakopoulos P]]
-
[[Category: McDonough, M]]
+
[[Category: McDonough M]]
-
[[Category: Ng, S]]
+
[[Category: Ng S]]
-
[[Category: Oppermann, U]]
+
[[Category: Oppermann U]]
-
[[Category: Pike, A C.W]]
+
[[Category: Pike ACW]]
-
[[Category: Schofield, C]]
+
[[Category: Schofield C]]
-
[[Category: Shafqat, N]]
+
[[Category: Shafqat N]]
-
[[Category: Ugochukwu, E]]
+
[[Category: Ugochukwu E]]
-
[[Category: Weigelt, J]]
+
[[Category: Weigelt J]]
-
[[Category: Yue, W W]]
+
[[Category: Yue WW]]
-
[[Category: Chromosome 11]]
+
[[Category: Von Delft F]]
-
[[Category: Oxidoreductase]]
+

Current revision

Crystal structure of the human 2-oxoglutarate oxygenase LOC390245

PDB ID 2w2i

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools