This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3g37

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:40, 13 December 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3g37.png|left|200px]]
 
-
{{STRUCTURE_3g37| PDB=3g37 | SCENE= }}
+
==Cryo-EM structure of actin filament in the presence of phosphate==
 +
<SX load='3g37' size='340' side='right' viewer='molstar' caption='[[3g37]], [[Resolution|resolution]] 6.00&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3g37]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3G37 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3G37 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 6&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=HIC:4-METHYL-HISTIDINE'>HIC</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3g37 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3g37 OCA], [https://pdbe.org/3g37 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3g37 RCSB], [https://www.ebi.ac.uk/pdbsum/3g37 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3g37 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ACTS_RABIT ACTS_RABIT] Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Assembled actin filaments support cellular signaling, intracellular trafficking, and cytokinesis. ATP hydrolysis triggered by actin assembly provides the structural cues for filament turnover in vivo. Here, we present the cryo-electron microscopic (cryo-EM) structure of filamentous actin (F-actin) in the presence of phosphate, with the visualization of some alpha-helical backbones and large side chains. A complete atomic model based on the EM map identified intermolecular interactions mediated by bound magnesium and phosphate ions. Comparison of the F-actin model with G-actin monomer crystal structures reveals a critical role for bending of the conserved proline-rich loop in triggering phosphate release following ATP hydrolysis. Crystal structures of G-actin show that mutations in this loop trap the catalytic site in two intermediate states of the ATPase cycle. The combined structural information allows us to propose a detailed molecular mechanism for the biochemical events, including actin polymerization and ATPase activation, critical for actin filament dynamics.
-
===Cryo-EM structure of actin filament in the presence of phosphate===
+
Structural basis for actin assembly, activation of ATP hydrolysis, and delayed phosphate release.,Murakami K, Yasunaga T, Noguchi TQ, Gomibuchi Y, Ngo KX, Uyeda TQ, Wakabayashi T Cell. 2010 Oct 15;143(2):275-87. PMID:20946985<ref>PMID:20946985</ref>
-
{{ABSTRACT_PUBMED_20946985}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 3g37" style="background-color:#fffaf0;"></div>
-
[[3g37]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3G37 OCA].
+
==See Also==
==See Also==
-
*[[Actin|Actin]]
+
*[[Actin 3D structures|Actin 3D structures]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:020946985</ref><references group="xtra"/>
+
__TOC__
 +
</SX>
 +
[[Category: Large Structures]]
[[Category: Oryctolagus cuniculus]]
[[Category: Oryctolagus cuniculus]]
-
[[Category: Murakami, K.]]
+
[[Category: Murakami K]]
-
[[Category: Noguchi, T Q.]]
+
[[Category: Noguchi TQ]]
-
[[Category: Uyeda, T Q.]]
+
[[Category: Uyeda TQ]]
-
[[Category: Wakabayshi, T.]]
+
[[Category: Wakabayshi T]]
-
[[Category: Yasunaga, T.]]
+
[[Category: Yasunaga T]]
-
[[Category: Actin]]
+
-
[[Category: Atp-binding]]
+
-
[[Category: Cell adhesion]]
+
-
[[Category: Cellular signaling]]
+
-
[[Category: Contractile protein]]
+
-
[[Category: Cryo-em]]
+
-
[[Category: Cytokinesis]]
+
-
[[Category: Cytoskeleton]]
+
-
[[Category: Methylation]]
+
-
[[Category: Muscle]]
+
-
[[Category: Muscle protein]]
+
-
[[Category: Nucleotide-binding]]
+
-
[[Category: Phosphoprotein]]
+

Current revision

Cryo-EM structure of actin filament in the presence of phosphate

3g37, resolution 6.00Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools